Hb_001898_010

Information

Type -
Description -
Location Contig1898: 3454-7056
Sequence    

Annotation

kegg
ID vvi:100247669
description TMV resistance protein N-like
nr
ID KDP42425.1
description hypothetical protein JCGZ_00222 [Jatropha curcas]
swissprot
ID Q9SCX7
description Inactive disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=3 SV=1
trembl
ID A0A067LD49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00222 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18826: 6954-7234
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_010 0.0 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
2 Hb_005375_070 0.0802754848 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
3 Hb_000402_030 0.1024168139 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
4 Hb_004712_160 0.1133447621 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
5 Hb_007574_050 0.1154510856 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
6 Hb_098160_010 0.1164800463 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
7 Hb_009476_110 0.1188165829 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
8 Hb_017857_010 0.1259711903 - - -
9 Hb_005814_010 0.1308407406 - - ATP binding protein, putative [Ricinus communis]
10 Hb_000451_040 0.1309664117 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000473_080 0.1337814189 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
12 Hb_000771_070 0.1362011849 - - PREDICTED: plastidial pyruvate kinase 4, chloroplastic [Jatropha curcas]
13 Hb_000776_050 0.1364316411 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
14 Hb_000363_110 0.1368838396 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
15 Hb_008380_010 0.1388897887 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
16 Hb_005000_050 0.1400021499 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
17 Hb_008021_010 0.1424511063 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
18 Hb_002343_020 0.1426245574 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
19 Hb_000752_020 0.1427630209 - - PREDICTED: uncharacterized protein LOC105641803 isoform X1 [Jatropha curcas]
20 Hb_031108_010 0.1479249234 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]

Gene co-expression network

sample Hb_001898_010 Hb_001898_010 Hb_005375_070 Hb_005375_070 Hb_001898_010--Hb_005375_070 Hb_000402_030 Hb_000402_030 Hb_001898_010--Hb_000402_030 Hb_004712_160 Hb_004712_160 Hb_001898_010--Hb_004712_160 Hb_007574_050 Hb_007574_050 Hb_001898_010--Hb_007574_050 Hb_098160_010 Hb_098160_010 Hb_001898_010--Hb_098160_010 Hb_009476_110 Hb_009476_110 Hb_001898_010--Hb_009476_110 Hb_005375_070--Hb_000402_030 Hb_017857_010 Hb_017857_010 Hb_005375_070--Hb_017857_010 Hb_005000_050 Hb_005000_050 Hb_005375_070--Hb_005000_050 Hb_002343_020 Hb_002343_020 Hb_005375_070--Hb_002343_020 Hb_149484_010 Hb_149484_010 Hb_005375_070--Hb_149484_010 Hb_000402_030--Hb_002343_020 Hb_005814_010 Hb_005814_010 Hb_000402_030--Hb_005814_010 Hb_000402_030--Hb_149484_010 Hb_000402_030--Hb_007574_050 Hb_004712_160--Hb_005375_070 Hb_000805_040 Hb_000805_040 Hb_004712_160--Hb_000805_040 Hb_002122_030 Hb_002122_030 Hb_004712_160--Hb_002122_030 Hb_004712_160--Hb_005000_050 Hb_004712_160--Hb_007574_050 Hb_007574_050--Hb_098160_010 Hb_007574_050--Hb_005375_070 Hb_002936_030 Hb_002936_030 Hb_007574_050--Hb_002936_030 Hb_001405_060 Hb_001405_060 Hb_007574_050--Hb_001405_060 Hb_098160_010--Hb_001405_060 Hb_002234_200 Hb_002234_200 Hb_098160_010--Hb_002234_200 Hb_000363_110 Hb_000363_110 Hb_098160_010--Hb_000363_110 Hb_005282_010 Hb_005282_010 Hb_098160_010--Hb_005282_010 Hb_003633_150 Hb_003633_150 Hb_009476_110--Hb_003633_150 Hb_000776_050 Hb_000776_050 Hb_009476_110--Hb_000776_050 Hb_031108_010 Hb_031108_010 Hb_009476_110--Hb_031108_010 Hb_009476_110--Hb_005375_070 Hb_003905_040 Hb_003905_040 Hb_009476_110--Hb_003905_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.127326 8.71014 4.24504 3.0843 0.164146 0.537224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.21149 0.16641 0.252839 1.81966 1.1625

CAGE analysis