Hb_005000_050

Information

Type -
Description -
Location Contig5000: 53212-55519
Sequence    

Annotation

kegg
ID pop:POPTR_0006s15490g
description POPTRDRAFT_653303; senescence-associated family protein
nr
ID XP_012076906.1
description PREDICTED: tetraspanin-2 [Jatropha curcas]
swissprot
ID Q9ZUN5
description Tetraspanin-2 OS=Arabidopsis thaliana GN=TET2 PE=2 SV=1
trembl
ID A0A067KPT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07390 PE=4 SV=1
Gene Ontology
ID GO:0016021
description tetraspanin-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45786: 53345-55495
cDNA
(Sanger)
(ID:Location)		 011_A19.ab1: 53454-55181 , 051_H07.ab1: 53426-55048 , 051_M23.ab1: 53426-55072

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_050 0.0 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
2 Hb_005375_070 0.1130019604 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
3 Hb_149484_010 0.1143695137 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]
4 Hb_001951_240 0.1178609414 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
5 Hb_023386_050 0.1221976823 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007574_050 0.123668682 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
7 Hb_004712_160 0.1264694161 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
8 Hb_098160_010 0.1313469496 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
9 Hb_000069_430 0.1327151148 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
10 Hb_164926_050 0.1340881872 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
11 Hb_002849_110 0.1343146971 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
12 Hb_172676_010 0.1346954042 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
13 Hb_001318_140 0.1383415698 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
14 Hb_001898_010 0.1400021499 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
15 Hb_001102_090 0.1401181248 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
16 Hb_000402_030 0.1404422679 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
17 Hb_004106_010 0.1407909059 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
18 Hb_001294_050 0.1468093794 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
19 Hb_001405_060 0.1472203446 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 4-like [Jatropha curcas]
20 Hb_005539_100 0.1477981258 - - nucleoside transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_005000_050 Hb_005000_050 Hb_005375_070 Hb_005375_070 Hb_005000_050--Hb_005375_070 Hb_149484_010 Hb_149484_010 Hb_005000_050--Hb_149484_010 Hb_001951_240 Hb_001951_240 Hb_005000_050--Hb_001951_240 Hb_023386_050 Hb_023386_050 Hb_005000_050--Hb_023386_050 Hb_007574_050 Hb_007574_050 Hb_005000_050--Hb_007574_050 Hb_004712_160 Hb_004712_160 Hb_005000_050--Hb_004712_160 Hb_001898_010 Hb_001898_010 Hb_005375_070--Hb_001898_010 Hb_000402_030 Hb_000402_030 Hb_005375_070--Hb_000402_030 Hb_017857_010 Hb_017857_010 Hb_005375_070--Hb_017857_010 Hb_002343_020 Hb_002343_020 Hb_005375_070--Hb_002343_020 Hb_005375_070--Hb_149484_010 Hb_003905_040 Hb_003905_040 Hb_149484_010--Hb_003905_040 Hb_006052_060 Hb_006052_060 Hb_149484_010--Hb_006052_060 Hb_003430_070 Hb_003430_070 Hb_149484_010--Hb_003430_070 Hb_149484_010--Hb_000402_030 Hb_000732_230 Hb_000732_230 Hb_001951_240--Hb_000732_230 Hb_172421_010 Hb_172421_010 Hb_001951_240--Hb_172421_010 Hb_001053_200 Hb_001053_200 Hb_001951_240--Hb_001053_200 Hb_000649_300 Hb_000649_300 Hb_001951_240--Hb_000649_300 Hb_002804_010 Hb_002804_010 Hb_001951_240--Hb_002804_010 Hb_002073_020 Hb_002073_020 Hb_001951_240--Hb_002073_020 Hb_001123_170 Hb_001123_170 Hb_023386_050--Hb_001123_170 Hb_000100_210 Hb_000100_210 Hb_023386_050--Hb_000100_210 Hb_002375_060 Hb_002375_060 Hb_023386_050--Hb_002375_060 Hb_003656_170 Hb_003656_170 Hb_023386_050--Hb_003656_170 Hb_002324_050 Hb_002324_050 Hb_023386_050--Hb_002324_050 Hb_098160_010 Hb_098160_010 Hb_007574_050--Hb_098160_010 Hb_007574_050--Hb_001898_010 Hb_007574_050--Hb_005375_070 Hb_002936_030 Hb_002936_030 Hb_007574_050--Hb_002936_030 Hb_007574_050--Hb_000402_030 Hb_001405_060 Hb_001405_060 Hb_007574_050--Hb_001405_060 Hb_004712_160--Hb_001898_010 Hb_004712_160--Hb_005375_070 Hb_000805_040 Hb_000805_040 Hb_004712_160--Hb_000805_040 Hb_002122_030 Hb_002122_030 Hb_004712_160--Hb_002122_030 Hb_004712_160--Hb_007574_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.37796 274.601 127.128 150.541 24.3721 14.5745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8783 5.47326 1.60055 58.6001 71.7713

CAGE analysis