Hb_149484_010

Information

Type transcription factor
Description TF Family: NF-YC
Location Contig149484: 346-999
Sequence    

Annotation

kegg
ID egr:104421439
description dr1-associated corepressor-like
nr
ID XP_010031686.1
description PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]
swissprot
ID Q9D6N5
description Dr1-associated corepressor OS=Mus musculus GN=Drap1 PE=2 SV=3
trembl
ID A0A067KHP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11093 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dr1-associated corepressor-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_149484_010 0.0 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]
2 Hb_003905_040 0.1017340964 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
3 Hb_006052_060 0.1119975325 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
4 Hb_003430_070 0.1123990468 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
5 Hb_005000_050 0.1143695137 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
6 Hb_000402_030 0.1145635238 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
7 Hb_005375_070 0.1166282945 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
8 Hb_001318_140 0.1191423795 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
9 Hb_002343_020 0.1223052947 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
10 Hb_003656_170 0.1246592019 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
11 Hb_000069_430 0.1264295667 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
12 Hb_002073_020 0.1287135212 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
13 Hb_005539_100 0.1309580672 - - nucleoside transporter, putative [Ricinus communis]
14 Hb_009476_110 0.1311383404 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
15 Hb_172676_010 0.132706539 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
16 Hb_002324_050 0.1350120847 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
17 Hb_001619_160 0.1356315797 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]
18 Hb_001294_050 0.1363473543 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
19 Hb_017857_010 0.1377772016 - - -
20 Hb_003964_010 0.1420486487 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]

Gene co-expression network

sample Hb_149484_010 Hb_149484_010 Hb_003905_040 Hb_003905_040 Hb_149484_010--Hb_003905_040 Hb_006052_060 Hb_006052_060 Hb_149484_010--Hb_006052_060 Hb_003430_070 Hb_003430_070 Hb_149484_010--Hb_003430_070 Hb_005000_050 Hb_005000_050 Hb_149484_010--Hb_005000_050 Hb_000402_030 Hb_000402_030 Hb_149484_010--Hb_000402_030 Hb_005375_070 Hb_005375_070 Hb_149484_010--Hb_005375_070 Hb_001357_060 Hb_001357_060 Hb_003905_040--Hb_001357_060 Hb_002783_140 Hb_002783_140 Hb_003905_040--Hb_002783_140 Hb_007193_030 Hb_007193_030 Hb_003905_040--Hb_007193_030 Hb_003905_040--Hb_000402_030 Hb_001369_020 Hb_001369_020 Hb_003905_040--Hb_001369_020 Hb_001619_160 Hb_001619_160 Hb_006052_060--Hb_001619_160 Hb_006052_060--Hb_003430_070 Hb_001318_140 Hb_001318_140 Hb_006052_060--Hb_001318_140 Hb_172676_010 Hb_172676_010 Hb_006052_060--Hb_172676_010 Hb_001242_190 Hb_001242_190 Hb_006052_060--Hb_001242_190 Hb_000009_150 Hb_000009_150 Hb_003430_070--Hb_000009_150 Hb_003430_070--Hb_001357_060 Hb_132840_020 Hb_132840_020 Hb_003430_070--Hb_132840_020 Hb_000329_790 Hb_000329_790 Hb_003430_070--Hb_000329_790 Hb_005000_050--Hb_005375_070 Hb_001951_240 Hb_001951_240 Hb_005000_050--Hb_001951_240 Hb_023386_050 Hb_023386_050 Hb_005000_050--Hb_023386_050 Hb_007574_050 Hb_007574_050 Hb_005000_050--Hb_007574_050 Hb_004712_160 Hb_004712_160 Hb_005000_050--Hb_004712_160 Hb_002343_020 Hb_002343_020 Hb_000402_030--Hb_002343_020 Hb_000402_030--Hb_005375_070 Hb_001898_010 Hb_001898_010 Hb_000402_030--Hb_001898_010 Hb_005814_010 Hb_005814_010 Hb_000402_030--Hb_005814_010 Hb_000402_030--Hb_007574_050 Hb_005375_070--Hb_001898_010 Hb_017857_010 Hb_017857_010 Hb_005375_070--Hb_017857_010 Hb_005375_070--Hb_002343_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.49541 31.3412 16.3012 16.257 1.8375 0.361092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.440015 2.08324 0.477096 9.06436 9.80494

CAGE analysis