Hb_001357_060

Information

Type transcription factor
Description TF Family: Orphans
Location Contig1357: 49894-52220
Sequence    

Annotation

kegg
ID cam:101495732
description probable salt tolerance-like protein At1g78600-like
nr
ID XP_004512115.1
description PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
swissprot
ID C0SVM5
description B-box zinc finger protein 19 OS=Arabidopsis thaliana GN=BBX19 PE=2 SV=1
trembl
ID A0A0B2RW66
description Putative salt tolerance-like protein OS=Glycine soja GN=glysoja_003175 PE=4 SV=1
Gene Ontology
ID GO:0005622
description b-box zinc finger protein 18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09907: 50009-51867 , PASA_asmbl_09908: 50009-51853 , PASA_asmbl_09909: 50910-51055
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_060 0.0 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
2 Hb_002809_120 0.1033462824 - - Uncharacterized protein TCM_031281 [Theobroma cacao]
3 Hb_001179_010 0.1056362226 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
4 Hb_002783_140 0.1063955389 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
5 Hb_003905_040 0.1108808982 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
6 Hb_000477_110 0.1170711025 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
7 Hb_000007_440 0.1182918889 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
8 Hb_007483_080 0.1183675887 - - hypothetical protein RCOM_0634810 [Ricinus communis]
9 Hb_004907_070 0.1190547597 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
10 Hb_003430_070 0.119843293 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
11 Hb_028928_020 0.1211651157 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
12 Hb_000260_480 0.1233812081 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
13 Hb_001213_030 0.1239731275 - - PAR1 protein [Theobroma cacao]
14 Hb_001951_230 0.1265805855 - - PREDICTED: phytochrome E isoform X2 [Jatropha curcas]
15 Hb_001989_070 0.1275779567 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
16 Hb_073171_050 0.1278095681 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
17 Hb_002849_180 0.1305377329 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
18 Hb_006483_090 0.1330908846 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
19 Hb_000613_250 0.1331903338 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
20 Hb_033187_020 0.1344506347 - - hypothetical protein CARUB_v10004250mg, partial [Capsella rubella]

Gene co-expression network

sample Hb_001357_060 Hb_001357_060 Hb_002809_120 Hb_002809_120 Hb_001357_060--Hb_002809_120 Hb_001179_010 Hb_001179_010 Hb_001357_060--Hb_001179_010 Hb_002783_140 Hb_002783_140 Hb_001357_060--Hb_002783_140 Hb_003905_040 Hb_003905_040 Hb_001357_060--Hb_003905_040 Hb_000477_110 Hb_000477_110 Hb_001357_060--Hb_000477_110 Hb_000007_440 Hb_000007_440 Hb_001357_060--Hb_000007_440 Hb_000260_480 Hb_000260_480 Hb_002809_120--Hb_000260_480 Hb_004907_070 Hb_004907_070 Hb_002809_120--Hb_004907_070 Hb_000500_230 Hb_000500_230 Hb_002809_120--Hb_000500_230 Hb_007747_100 Hb_007747_100 Hb_002809_120--Hb_007747_100 Hb_005271_180 Hb_005271_180 Hb_002809_120--Hb_005271_180 Hb_000329_790 Hb_000329_790 Hb_001179_010--Hb_000329_790 Hb_001179_010--Hb_000007_440 Hb_007483_080 Hb_007483_080 Hb_001179_010--Hb_007483_080 Hb_000096_110 Hb_000096_110 Hb_001179_010--Hb_000096_110 Hb_026698_020 Hb_026698_020 Hb_001179_010--Hb_026698_020 Hb_002890_320 Hb_002890_320 Hb_002783_140--Hb_002890_320 Hb_033153_040 Hb_033153_040 Hb_002783_140--Hb_033153_040 Hb_005569_030 Hb_005569_030 Hb_002783_140--Hb_005569_030 Hb_003387_080 Hb_003387_080 Hb_002783_140--Hb_003387_080 Hb_073171_050 Hb_073171_050 Hb_002783_140--Hb_073171_050 Hb_149484_010 Hb_149484_010 Hb_003905_040--Hb_149484_010 Hb_003905_040--Hb_002783_140 Hb_007193_030 Hb_007193_030 Hb_003905_040--Hb_007193_030 Hb_000402_030 Hb_000402_030 Hb_003905_040--Hb_000402_030 Hb_001369_020 Hb_001369_020 Hb_003905_040--Hb_001369_020 Hb_006483_090 Hb_006483_090 Hb_000477_110--Hb_006483_090 Hb_000472_020 Hb_000472_020 Hb_000477_110--Hb_000472_020 Hb_006269_010 Hb_006269_010 Hb_000477_110--Hb_006269_010 Hb_001956_080 Hb_001956_080 Hb_000477_110--Hb_001956_080 Hb_001153_090 Hb_001153_090 Hb_000477_110--Hb_001153_090 Hb_000613_250 Hb_000613_250 Hb_000477_110--Hb_000613_250 Hb_000007_440--Hb_007483_080 Hb_002849_180 Hb_002849_180 Hb_000007_440--Hb_002849_180 Hb_002010_100 Hb_002010_100 Hb_000007_440--Hb_002010_100 Hb_000007_440--Hb_006483_090 Hb_001158_120 Hb_001158_120 Hb_000007_440--Hb_001158_120 Hb_006970_170 Hb_006970_170 Hb_000007_440--Hb_006970_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.39659 70.2752 51.4498 47.4026 0.539357 0.753096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.29902 1.08498 1.8731 19.4102 41.4319

CAGE analysis