Hb_000402_030

Information

Type -
Description -
Location Contig402: 26711-38005
Sequence    

Annotation

kegg
ID csv:101210276
description uncharacterized LOC101210276
nr
ID XP_012085437.1
description PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
swissprot
ID Q9CAL3
description Cysteine-rich receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=CRK2 PE=2 SV=1
trembl
ID A0A067K301
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17783 PE=3 SV=1
Gene Ontology
ID GO:0005886
description cysteine-rich receptor-like protein kinase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39912: 26965-30030 , PASA_asmbl_39916: 32330-32531 , PASA_asmbl_39917: 34749-36933 , PASA_asmbl_39919: 38069-38319
cDNA
(Sanger)
(ID:Location)		 017_E16r.ab1: 25002-26765

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000402_030 0.0 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
2 Hb_002343_020 0.0912925629 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
3 Hb_005375_070 0.0991744063 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
4 Hb_001898_010 0.1024168139 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
5 Hb_005814_010 0.1130908255 - - ATP binding protein, putative [Ricinus communis]
6 Hb_149484_010 0.1145635238 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]
7 Hb_007574_050 0.1202932796 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
8 Hb_003905_040 0.1207380734 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
9 Hb_001538_050 0.1256554321 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
10 Hb_000771_070 0.1269357941 - - PREDICTED: plastidial pyruvate kinase 4, chloroplastic [Jatropha curcas]
11 Hb_003529_230 0.1280943553 transcription factor TF Family: ERF -
12 Hb_000027_130 0.1290442395 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
13 Hb_000522_130 0.1320706355 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
14 Hb_009476_110 0.1333568843 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
15 Hb_005539_100 0.1364475798 - - nucleoside transporter, putative [Ricinus communis]
16 Hb_172676_010 0.1365964401 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
17 Hb_012098_180 0.1369854094 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
18 Hb_003430_070 0.1376232886 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
19 Hb_001123_170 0.137959651 - - conserved hypothetical protein [Ricinus communis]
20 Hb_023386_050 0.1398446622 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000402_030 Hb_000402_030 Hb_002343_020 Hb_002343_020 Hb_000402_030--Hb_002343_020 Hb_005375_070 Hb_005375_070 Hb_000402_030--Hb_005375_070 Hb_001898_010 Hb_001898_010 Hb_000402_030--Hb_001898_010 Hb_005814_010 Hb_005814_010 Hb_000402_030--Hb_005814_010 Hb_149484_010 Hb_149484_010 Hb_000402_030--Hb_149484_010 Hb_007574_050 Hb_007574_050 Hb_000402_030--Hb_007574_050 Hb_025236_020 Hb_025236_020 Hb_002343_020--Hb_025236_020 Hb_005649_010 Hb_005649_010 Hb_002343_020--Hb_005649_010 Hb_004032_090 Hb_004032_090 Hb_002343_020--Hb_004032_090 Hb_001123_170 Hb_001123_170 Hb_002343_020--Hb_001123_170 Hb_002343_020--Hb_005375_070 Hb_005375_070--Hb_001898_010 Hb_017857_010 Hb_017857_010 Hb_005375_070--Hb_017857_010 Hb_005000_050 Hb_005000_050 Hb_005375_070--Hb_005000_050 Hb_005375_070--Hb_149484_010 Hb_004712_160 Hb_004712_160 Hb_001898_010--Hb_004712_160 Hb_001898_010--Hb_007574_050 Hb_098160_010 Hb_098160_010 Hb_001898_010--Hb_098160_010 Hb_009476_110 Hb_009476_110 Hb_001898_010--Hb_009476_110 Hb_000495_050 Hb_000495_050 Hb_005814_010--Hb_000495_050 Hb_000771_070 Hb_000771_070 Hb_005814_010--Hb_000771_070 Hb_000031_160 Hb_000031_160 Hb_005814_010--Hb_000031_160 Hb_052434_010 Hb_052434_010 Hb_005814_010--Hb_052434_010 Hb_000552_090 Hb_000552_090 Hb_005814_010--Hb_000552_090 Hb_003905_040 Hb_003905_040 Hb_149484_010--Hb_003905_040 Hb_006052_060 Hb_006052_060 Hb_149484_010--Hb_006052_060 Hb_003430_070 Hb_003430_070 Hb_149484_010--Hb_003430_070 Hb_149484_010--Hb_005000_050 Hb_007574_050--Hb_098160_010 Hb_007574_050--Hb_005375_070 Hb_002936_030 Hb_002936_030 Hb_007574_050--Hb_002936_030 Hb_001405_060 Hb_001405_060 Hb_007574_050--Hb_001405_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.568712 20.7311 11.9079 7.46558 0.395088 0.767609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.131712 0.636742 0.0854527 5.68895 4.38657

CAGE analysis