Hb_017857_010

Information

Type -
Description -
Location Contig17857: 299-3121
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17160: 1908-3040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017857_010 0.0 - - -
2 Hb_005375_070 0.1061720767 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
3 Hb_006615_160 0.1128439996 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
4 Hb_000776_050 0.1147589215 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
5 Hb_098160_010 0.1168270671 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
6 Hb_007574_050 0.1254762567 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
7 Hb_001898_010 0.1259711903 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
8 Hb_009476_110 0.1313062235 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
9 Hb_000853_100 0.1375461305 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF073 [Jatropha curcas]
10 Hb_149484_010 0.1377772016 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]
11 Hb_082870_010 0.1404900449 - - Disease resistance protein RFL1, putative [Ricinus communis]
12 Hb_000340_560 0.1438921488 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001329_080 0.1440819986 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
14 Hb_005282_010 0.1445260771 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
15 Hb_003633_150 0.1458511232 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
16 Hb_002122_030 0.1468228652 - - -
17 Hb_001405_060 0.1469646182 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 4-like [Jatropha curcas]
18 Hb_002343_020 0.1502939168 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
19 Hb_000402_030 0.1512921898 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
20 Hb_005000_050 0.1519708392 - - PREDICTED: tetraspanin-2 [Jatropha curcas]

Gene co-expression network

sample Hb_017857_010 Hb_017857_010 Hb_005375_070 Hb_005375_070 Hb_017857_010--Hb_005375_070 Hb_006615_160 Hb_006615_160 Hb_017857_010--Hb_006615_160 Hb_000776_050 Hb_000776_050 Hb_017857_010--Hb_000776_050 Hb_098160_010 Hb_098160_010 Hb_017857_010--Hb_098160_010 Hb_007574_050 Hb_007574_050 Hb_017857_010--Hb_007574_050 Hb_001898_010 Hb_001898_010 Hb_017857_010--Hb_001898_010 Hb_005375_070--Hb_001898_010 Hb_000402_030 Hb_000402_030 Hb_005375_070--Hb_000402_030 Hb_005000_050 Hb_005000_050 Hb_005375_070--Hb_005000_050 Hb_002343_020 Hb_002343_020 Hb_005375_070--Hb_002343_020 Hb_149484_010 Hb_149484_010 Hb_005375_070--Hb_149484_010 Hb_001329_080 Hb_001329_080 Hb_006615_160--Hb_001329_080 Hb_000853_100 Hb_000853_100 Hb_006615_160--Hb_000853_100 Hb_000009_300 Hb_000009_300 Hb_006615_160--Hb_000009_300 Hb_002030_180 Hb_002030_180 Hb_006615_160--Hb_002030_180 Hb_000172_050 Hb_000172_050 Hb_006615_160--Hb_000172_050 Hb_002053_030 Hb_002053_030 Hb_000776_050--Hb_002053_030 Hb_000345_500 Hb_000345_500 Hb_000776_050--Hb_000345_500 Hb_009476_110 Hb_009476_110 Hb_000776_050--Hb_009476_110 Hb_031108_010 Hb_031108_010 Hb_000776_050--Hb_031108_010 Hb_000473_080 Hb_000473_080 Hb_000776_050--Hb_000473_080 Hb_001405_060 Hb_001405_060 Hb_098160_010--Hb_001405_060 Hb_098160_010--Hb_007574_050 Hb_002234_200 Hb_002234_200 Hb_098160_010--Hb_002234_200 Hb_000363_110 Hb_000363_110 Hb_098160_010--Hb_000363_110 Hb_005282_010 Hb_005282_010 Hb_098160_010--Hb_005282_010 Hb_098160_010--Hb_001898_010 Hb_007574_050--Hb_001898_010 Hb_007574_050--Hb_005375_070 Hb_002936_030 Hb_002936_030 Hb_007574_050--Hb_002936_030 Hb_007574_050--Hb_000402_030 Hb_007574_050--Hb_001405_060 Hb_001898_010--Hb_000402_030 Hb_004712_160 Hb_004712_160 Hb_001898_010--Hb_004712_160 Hb_001898_010--Hb_009476_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.612862 12.9616 6.01311 6.89353 0.49931 0.165803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.318734 0.445762 0.521109 3.43064 1.21805

CAGE analysis