Hb_000853_100

Information

Type transcription factor
Description TF Family: ERF
Location Contig853: 68871-70331
Sequence    

Annotation

kegg
ID rcu:RCOM_1179490
description hypothetical protein
nr
ID XP_012082821.1
description PREDICTED: ethylene-responsive transcription factor ERF073 [Jatropha curcas]
swissprot
ID P42736
description Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2
trembl
ID A0A067K8U5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13970 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf073

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_100 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF073 [Jatropha curcas]
2 Hb_000172_050 0.1199800433 - - PREDICTED: uncharacterized protein LOC105650611 [Jatropha curcas]
3 Hb_017857_010 0.1375461305 - - -
4 Hb_000776_050 0.1414128216 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
5 Hb_006615_160 0.1450768192 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
6 Hb_000345_500 0.1636122934 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
7 Hb_008380_010 0.1681068979 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
8 Hb_002053_030 0.169404952 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
9 Hb_022206_030 0.1779227628 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
10 Hb_000107_440 0.180071991 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
11 Hb_000473_080 0.1801364012 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
12 Hb_002035_030 0.1806907026 - - hypothetical protein PRUPE_ppa003221mg [Prunus persica]
13 Hb_098160_010 0.185665873 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
14 Hb_000094_120 0.1878548884 - - PREDICTED: uncharacterized protein At1g01500 [Jatropha curcas]
15 Hb_020967_010 0.1884357002 - - -
16 Hb_000038_040 0.1893338683 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
17 Hb_006916_200 0.1897629193 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
18 Hb_000103_400 0.1900824909 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
19 Hb_006925_070 0.1902260756 - - hypothetical protein JCGZ_20652 [Jatropha curcas]
20 Hb_031108_010 0.1903352776 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]

Gene co-expression network

sample Hb_000853_100 Hb_000853_100 Hb_000172_050 Hb_000172_050 Hb_000853_100--Hb_000172_050 Hb_017857_010 Hb_017857_010 Hb_000853_100--Hb_017857_010 Hb_000776_050 Hb_000776_050 Hb_000853_100--Hb_000776_050 Hb_006615_160 Hb_006615_160 Hb_000853_100--Hb_006615_160 Hb_000345_500 Hb_000345_500 Hb_000853_100--Hb_000345_500 Hb_008380_010 Hb_008380_010 Hb_000853_100--Hb_008380_010 Hb_000172_050--Hb_006615_160 Hb_001355_070 Hb_001355_070 Hb_000172_050--Hb_001355_070 Hb_000172_050--Hb_017857_010 Hb_014720_050 Hb_014720_050 Hb_000172_050--Hb_014720_050 Hb_000094_120 Hb_000094_120 Hb_000172_050--Hb_000094_120 Hb_005375_070 Hb_005375_070 Hb_017857_010--Hb_005375_070 Hb_017857_010--Hb_006615_160 Hb_017857_010--Hb_000776_050 Hb_098160_010 Hb_098160_010 Hb_017857_010--Hb_098160_010 Hb_007574_050 Hb_007574_050 Hb_017857_010--Hb_007574_050 Hb_001898_010 Hb_001898_010 Hb_017857_010--Hb_001898_010 Hb_002053_030 Hb_002053_030 Hb_000776_050--Hb_002053_030 Hb_000776_050--Hb_000345_500 Hb_009476_110 Hb_009476_110 Hb_000776_050--Hb_009476_110 Hb_031108_010 Hb_031108_010 Hb_000776_050--Hb_031108_010 Hb_000473_080 Hb_000473_080 Hb_000776_050--Hb_000473_080 Hb_001329_080 Hb_001329_080 Hb_006615_160--Hb_001329_080 Hb_000009_300 Hb_000009_300 Hb_006615_160--Hb_000009_300 Hb_002030_180 Hb_002030_180 Hb_006615_160--Hb_002030_180 Hb_000345_500--Hb_002053_030 Hb_006043_020 Hb_006043_020 Hb_000345_500--Hb_006043_020 Hb_006538_030 Hb_006538_030 Hb_000345_500--Hb_006538_030 Hb_000069_330 Hb_000069_330 Hb_000345_500--Hb_000069_330 Hb_001863_270 Hb_001863_270 Hb_000345_500--Hb_001863_270 Hb_008380_010--Hb_098160_010 Hb_006414_020 Hb_006414_020 Hb_008380_010--Hb_006414_020 Hb_008380_010--Hb_001898_010 Hb_000103_400 Hb_000103_400 Hb_008380_010--Hb_000103_400 Hb_033149_020 Hb_033149_020 Hb_008380_010--Hb_033149_020 Hb_181824_010 Hb_181824_010 Hb_008380_010--Hb_181824_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.646748 29.5221 9.84764 13.2338 0.539845 0.450388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.859685 1.63437 3.31911 6.91831 0.586382

CAGE analysis