Hb_000172_050

Information

Type -
Description -
Location Contig172: 86993-87872
Sequence    

Annotation

kegg
ID rcu:RCOM_0198090
description hypothetical protein
nr
ID XP_012092947.1
description PREDICTED: uncharacterized protein LOC105650611 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LEP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24066 PE=4 SV=1
Gene Ontology
ID GO:0005773
description lipase plat lh2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16120: 87025-87927
cDNA
(Sanger)
(ID:Location)		 023_K14.ab1: 87217-87927 , 040_P18.ab1: 87123-87884

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_050 0.0 - - PREDICTED: uncharacterized protein LOC105650611 [Jatropha curcas]
2 Hb_000853_100 0.1199800433 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF073 [Jatropha curcas]
3 Hb_006615_160 0.1517218788 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
4 Hb_001355_070 0.1526504351 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 2 [Theobroma cacao]
5 Hb_017857_010 0.1546337356 - - -
6 Hb_014720_050 0.1752958606 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
7 Hb_000094_120 0.1783284251 - - PREDICTED: uncharacterized protein At1g01500 [Jatropha curcas]
8 Hb_000977_090 0.184479018 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
9 Hb_105660_010 0.1854120214 - - PREDICTED: potassium channel AKT6-like [Jatropha curcas]
10 Hb_000776_050 0.1864138545 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
11 Hb_000009_300 0.1871191857 - - hypothetical protein CICLE_v10024731mg [Citrus clementina]
12 Hb_000913_080 0.1916424749 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 11 [Jatropha curcas]
13 Hb_022206_030 0.1938280015 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
14 Hb_005695_020 0.1956580092 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
15 Hb_020967_010 0.1963634264 - - -
16 Hb_082870_010 0.1964034424 - - Disease resistance protein RFL1, putative [Ricinus communis]
17 Hb_000062_490 0.199079274 - - PREDICTED: lipoxygenase 6, chloroplastic [Jatropha curcas]
18 Hb_001454_360 0.200499459 - - PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]
19 Hb_008948_060 0.2009317122 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000608_020 0.2014242371 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]

Gene co-expression network

sample Hb_000172_050 Hb_000172_050 Hb_000853_100 Hb_000853_100 Hb_000172_050--Hb_000853_100 Hb_006615_160 Hb_006615_160 Hb_000172_050--Hb_006615_160 Hb_001355_070 Hb_001355_070 Hb_000172_050--Hb_001355_070 Hb_017857_010 Hb_017857_010 Hb_000172_050--Hb_017857_010 Hb_014720_050 Hb_014720_050 Hb_000172_050--Hb_014720_050 Hb_000094_120 Hb_000094_120 Hb_000172_050--Hb_000094_120 Hb_000853_100--Hb_017857_010 Hb_000776_050 Hb_000776_050 Hb_000853_100--Hb_000776_050 Hb_000853_100--Hb_006615_160 Hb_000345_500 Hb_000345_500 Hb_000853_100--Hb_000345_500 Hb_008380_010 Hb_008380_010 Hb_000853_100--Hb_008380_010 Hb_006615_160--Hb_017857_010 Hb_001329_080 Hb_001329_080 Hb_006615_160--Hb_001329_080 Hb_000009_300 Hb_000009_300 Hb_006615_160--Hb_000009_300 Hb_002030_180 Hb_002030_180 Hb_006615_160--Hb_002030_180 Hb_001195_500 Hb_001195_500 Hb_001355_070--Hb_001195_500 Hb_002928_180 Hb_002928_180 Hb_001355_070--Hb_002928_180 Hb_000429_110 Hb_000429_110 Hb_001355_070--Hb_000429_110 Hb_002662_090 Hb_002662_090 Hb_001355_070--Hb_002662_090 Hb_010174_190 Hb_010174_190 Hb_001355_070--Hb_010174_190 Hb_005375_070 Hb_005375_070 Hb_017857_010--Hb_005375_070 Hb_017857_010--Hb_000776_050 Hb_098160_010 Hb_098160_010 Hb_017857_010--Hb_098160_010 Hb_007574_050 Hb_007574_050 Hb_017857_010--Hb_007574_050 Hb_001898_010 Hb_001898_010 Hb_017857_010--Hb_001898_010 Hb_000735_140 Hb_000735_140 Hb_014720_050--Hb_000735_140 Hb_007382_100 Hb_007382_100 Hb_014720_050--Hb_007382_100 Hb_001318_140 Hb_001318_140 Hb_014720_050--Hb_001318_140 Hb_001226_170 Hb_001226_170 Hb_014720_050--Hb_001226_170 Hb_000056_080 Hb_000056_080 Hb_014720_050--Hb_000056_080 Hb_001486_200 Hb_001486_200 Hb_014720_050--Hb_001486_200 Hb_000094_250 Hb_000094_250 Hb_000094_120--Hb_000094_250 Hb_000062_490 Hb_000062_490 Hb_000094_120--Hb_000062_490 Hb_068576_010 Hb_068576_010 Hb_000094_120--Hb_068576_010 Hb_000094_120--Hb_002030_180 Hb_000094_120--Hb_006615_160 Hb_005539_260 Hb_005539_260 Hb_000094_120--Hb_005539_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.57893 168.819 59.734 120.699 3.18046 0.831709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.02459 20.0053 17.4698 62.8244 8.30857

CAGE analysis