Hb_001486_200

Information

Type -
Description -
Location Contig1486: 142365-145598
Sequence    

Annotation

kegg
ID rcu:RCOM_1322260
description hypothetical protein
nr
ID XP_012070423.1
description PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
swissprot
ID B8XCH5
description Protein QUIRKY OS=Arabidopsis thaliana GN=QKY PE=2 SV=1
trembl
ID A0A067KTY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02701 PE=4 SV=1
Gene Ontology
ID GO:0005783
description protein quirky isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12255: 143797-148584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_200 0.0 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
2 Hb_000059_300 0.1261342315 - - caspase, putative [Ricinus communis]
3 Hb_000110_300 0.1272473273 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
4 Hb_001049_160 0.1349033283 - - aldose 1-epimerase, putative [Ricinus communis]
5 Hb_002876_250 0.1373631735 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
6 Hb_014720_050 0.1390050785 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
7 Hb_128589_010 0.1390735819 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
8 Hb_000207_290 0.1440006064 - - hypothetical protein JCGZ_03920 [Jatropha curcas]
9 Hb_000805_190 0.1441863034 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
10 Hb_000735_140 0.146442333 - - 3-glucanase family protein [Populus trichocarpa]
11 Hb_000913_080 0.1476574308 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 11 [Jatropha curcas]
12 Hb_001956_060 0.1477480959 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
13 Hb_000465_260 0.1484824279 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
14 Hb_002217_090 0.1528922963 - - PREDICTED: probable protein phosphatase 2C 13 [Jatropha curcas]
15 Hb_001959_120 0.1529164529 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
16 Hb_001381_060 0.1542128674 - - monoxygenase, putative [Ricinus communis]
17 Hb_006816_480 0.1569161489 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
18 Hb_000056_080 0.1571467746 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
19 Hb_007382_100 0.1598124931 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
20 Hb_009646_010 0.1612391989 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_001486_200 Hb_001486_200 Hb_000059_300 Hb_000059_300 Hb_001486_200--Hb_000059_300 Hb_000110_300 Hb_000110_300 Hb_001486_200--Hb_000110_300 Hb_001049_160 Hb_001049_160 Hb_001486_200--Hb_001049_160 Hb_002876_250 Hb_002876_250 Hb_001486_200--Hb_002876_250 Hb_014720_050 Hb_014720_050 Hb_001486_200--Hb_014720_050 Hb_128589_010 Hb_128589_010 Hb_001486_200--Hb_128589_010 Hb_005779_030 Hb_005779_030 Hb_000059_300--Hb_005779_030 Hb_000056_350 Hb_000056_350 Hb_000059_300--Hb_000056_350 Hb_009646_010 Hb_009646_010 Hb_000059_300--Hb_009646_010 Hb_001341_200 Hb_001341_200 Hb_000059_300--Hb_001341_200 Hb_000181_210 Hb_000181_210 Hb_000059_300--Hb_000181_210 Hb_003747_210 Hb_003747_210 Hb_000110_300--Hb_003747_210 Hb_002217_090 Hb_002217_090 Hb_000110_300--Hb_002217_090 Hb_002915_060 Hb_002915_060 Hb_000110_300--Hb_002915_060 Hb_001956_060 Hb_001956_060 Hb_000110_300--Hb_001956_060 Hb_000012_240 Hb_000012_240 Hb_000110_300--Hb_000012_240 Hb_000110_300--Hb_009646_010 Hb_001619_160 Hb_001619_160 Hb_001049_160--Hb_001619_160 Hb_002027_170 Hb_002027_170 Hb_001049_160--Hb_002027_170 Hb_007382_100 Hb_007382_100 Hb_001049_160--Hb_007382_100 Hb_001049_160--Hb_002876_250 Hb_001318_140 Hb_001318_140 Hb_001049_160--Hb_001318_140 Hb_000116_210 Hb_000116_210 Hb_002876_250--Hb_000116_210 Hb_000120_160 Hb_000120_160 Hb_002876_250--Hb_000120_160 Hb_000207_290 Hb_000207_290 Hb_002876_250--Hb_000207_290 Hb_000805_230 Hb_000805_230 Hb_002876_250--Hb_000805_230 Hb_000836_600 Hb_000836_600 Hb_002876_250--Hb_000836_600 Hb_000805_190 Hb_000805_190 Hb_002876_250--Hb_000805_190 Hb_000735_140 Hb_000735_140 Hb_014720_050--Hb_000735_140 Hb_014720_050--Hb_007382_100 Hb_014720_050--Hb_001318_140 Hb_001226_170 Hb_001226_170 Hb_014720_050--Hb_001226_170 Hb_000056_080 Hb_000056_080 Hb_014720_050--Hb_000056_080 Hb_128589_010--Hb_001956_060 Hb_128589_010--Hb_000110_300 Hb_000205_250 Hb_000205_250 Hb_128589_010--Hb_000205_250 Hb_128589_010--Hb_009646_010 Hb_000345_320 Hb_000345_320 Hb_128589_010--Hb_000345_320 Hb_000625_090 Hb_000625_090 Hb_128589_010--Hb_000625_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.755096 8.47708 3.32227 7.02204 0.169615 0.212549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.20583 1.70804 2.6453 4.22604 3.17605

CAGE analysis