Hb_000207_290

Information

Type -
Description -
Location Contig207: 372835-390345
Sequence    

Annotation

kegg
ID rcu:RCOM_0686670
description protein with unknown function (EC:1.3.1.74)
nr
ID KDP47112.1
description hypothetical protein JCGZ_03920 [Jatropha curcas]
swissprot
ID Q39202
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2
trembl
ID A0A067LFD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03920 PE=4 SV=1
Gene Ontology
ID GO:0016021
description leucine-rich repeat receptor-like tyrosine-protein kinase at2g41820

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21331: 387229-390250
cDNA
(Sanger)
(ID:Location)		 041_P09.ab1: 387229-387955

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_290 0.0 - - hypothetical protein JCGZ_03920 [Jatropha curcas]
2 Hb_000805_190 0.1210254703 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
3 Hb_002876_250 0.1216091193 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
4 Hb_000056_280 0.1254073411 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
5 Hb_000116_210 0.1260631848 - - PREDICTED: uncharacterized protein LOC105628567 [Jatropha curcas]
6 Hb_001049_160 0.1407748081 - - aldose 1-epimerase, putative [Ricinus communis]
7 Hb_001486_200 0.1440006064 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
8 Hb_000072_020 0.147494028 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
9 Hb_001242_190 0.1491359034 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
10 Hb_000059_130 0.149518425 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
11 Hb_000465_260 0.1533676329 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
12 Hb_001619_160 0.161462672 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]
13 Hb_000649_120 0.1625569209 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_000028_340 0.1647397256 - - PREDICTED: potassium channel SKOR-like [Prunus mume]
15 Hb_002235_310 0.1649891999 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
16 Hb_000120_160 0.1662616661 - - unnamed protein product [Vitis vinifera]
17 Hb_033234_010 0.1673764402 desease resistance Gene Name: LRR_8 Disease resistance protein RPP8 [Theobroma cacao]
18 Hb_001410_010 0.1674007156 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
19 Hb_132840_030 0.167633403 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
20 Hb_005054_170 0.1680890051 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000207_290 Hb_000207_290 Hb_000805_190 Hb_000805_190 Hb_000207_290--Hb_000805_190 Hb_002876_250 Hb_002876_250 Hb_000207_290--Hb_002876_250 Hb_000056_280 Hb_000056_280 Hb_000207_290--Hb_000056_280 Hb_000116_210 Hb_000116_210 Hb_000207_290--Hb_000116_210 Hb_001049_160 Hb_001049_160 Hb_000207_290--Hb_001049_160 Hb_001486_200 Hb_001486_200 Hb_000207_290--Hb_001486_200 Hb_000805_190--Hb_000056_280 Hb_000059_130 Hb_000059_130 Hb_000805_190--Hb_000059_130 Hb_000072_020 Hb_000072_020 Hb_000805_190--Hb_000072_020 Hb_002235_310 Hb_002235_310 Hb_000805_190--Hb_002235_310 Hb_000110_300 Hb_000110_300 Hb_000805_190--Hb_000110_300 Hb_033363_010 Hb_033363_010 Hb_000805_190--Hb_033363_010 Hb_002876_250--Hb_000116_210 Hb_000120_160 Hb_000120_160 Hb_002876_250--Hb_000120_160 Hb_000805_230 Hb_000805_230 Hb_002876_250--Hb_000805_230 Hb_000836_600 Hb_000836_600 Hb_002876_250--Hb_000836_600 Hb_002876_250--Hb_000805_190 Hb_000465_260 Hb_000465_260 Hb_000056_280--Hb_000465_260 Hb_000056_280--Hb_000072_020 Hb_002151_100 Hb_002151_100 Hb_000056_280--Hb_002151_100 Hb_009646_010 Hb_009646_010 Hb_000056_280--Hb_009646_010 Hb_000056_280--Hb_033363_010 Hb_000116_210--Hb_000805_230 Hb_001288_070 Hb_001288_070 Hb_000116_210--Hb_001288_070 Hb_000116_210--Hb_000120_160 Hb_002154_020 Hb_002154_020 Hb_000116_210--Hb_002154_020 Hb_023344_060 Hb_023344_060 Hb_000116_210--Hb_023344_060 Hb_001619_160 Hb_001619_160 Hb_001049_160--Hb_001619_160 Hb_002027_170 Hb_002027_170 Hb_001049_160--Hb_002027_170 Hb_007382_100 Hb_007382_100 Hb_001049_160--Hb_007382_100 Hb_001049_160--Hb_002876_250 Hb_001049_160--Hb_001486_200 Hb_001318_140 Hb_001318_140 Hb_001049_160--Hb_001318_140 Hb_000059_300 Hb_000059_300 Hb_001486_200--Hb_000059_300 Hb_001486_200--Hb_000110_300 Hb_001486_200--Hb_002876_250 Hb_014720_050 Hb_014720_050 Hb_001486_200--Hb_014720_050 Hb_128589_010 Hb_128589_010 Hb_001486_200--Hb_128589_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.566966 9.09915 2.376 5.11866 0.361992 0.524071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.733203 0.301519 2.29701 4.7693 3.24708

CAGE analysis