Hb_000059_300

Information

Type -
Description -
Location Contig59: 273566-275646
Sequence    

Annotation

kegg
ID rcu:RCOM_1502860
description caspase, putative
nr
ID XP_002511047.1
description caspase, putative [Ricinus communis]
swissprot
ID Q7XJE6
description Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1
trembl
ID B9RA22
description Caspase, putative OS=Ricinus communis GN=RCOM_1502860 PE=4 SV=1
Gene Ontology
ID GO:0004197
description metacaspase-1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50180: 272911-275233
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_300 0.0 - - caspase, putative [Ricinus communis]
2 Hb_001486_200 0.1261342315 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
3 Hb_005779_030 0.1279232565 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
4 Hb_000056_350 0.1387875087 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
5 Hb_009646_010 0.148871527 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
6 Hb_001341_200 0.1515725599 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
7 Hb_000181_210 0.1572304991 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
8 Hb_128589_010 0.1586794768 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
9 Hb_000465_260 0.1589571204 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
10 Hb_000110_300 0.162262727 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
11 Hb_004195_090 0.1638286493 - - PREDICTED: probable mitochondrial chaperone bcs1 [Jatropha curcas]
12 Hb_001054_090 0.1654579551 - - Potassium channel SKOR, putative [Ricinus communis]
13 Hb_030944_010 0.1702825518 - - PREDICTED: uncharacterized protein LOC105633455 [Jatropha curcas]
14 Hb_000832_280 0.170813314 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
15 Hb_000913_080 0.171571148 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 11 [Jatropha curcas]
16 Hb_006816_480 0.1737355604 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
17 Hb_001049_160 0.174610918 - - aldose 1-epimerase, putative [Ricinus communis]
18 Hb_000084_220 0.1759637267 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
19 Hb_000983_080 0.1771414324 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
20 Hb_002151_100 0.1785960275 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]

Gene co-expression network

sample Hb_000059_300 Hb_000059_300 Hb_001486_200 Hb_001486_200 Hb_000059_300--Hb_001486_200 Hb_005779_030 Hb_005779_030 Hb_000059_300--Hb_005779_030 Hb_000056_350 Hb_000056_350 Hb_000059_300--Hb_000056_350 Hb_009646_010 Hb_009646_010 Hb_000059_300--Hb_009646_010 Hb_001341_200 Hb_001341_200 Hb_000059_300--Hb_001341_200 Hb_000181_210 Hb_000181_210 Hb_000059_300--Hb_000181_210 Hb_000110_300 Hb_000110_300 Hb_001486_200--Hb_000110_300 Hb_001049_160 Hb_001049_160 Hb_001486_200--Hb_001049_160 Hb_002876_250 Hb_002876_250 Hb_001486_200--Hb_002876_250 Hb_014720_050 Hb_014720_050 Hb_001486_200--Hb_014720_050 Hb_128589_010 Hb_128589_010 Hb_001486_200--Hb_128589_010 Hb_005779_030--Hb_009646_010 Hb_005779_030--Hb_000110_300 Hb_000465_260 Hb_000465_260 Hb_005779_030--Hb_000465_260 Hb_001818_060 Hb_001818_060 Hb_005779_030--Hb_001818_060 Hb_005779_030--Hb_128589_010 Hb_002571_070 Hb_002571_070 Hb_000056_350--Hb_002571_070 Hb_000832_280 Hb_000832_280 Hb_000056_350--Hb_000832_280 Hb_000056_350--Hb_000181_210 Hb_000540_040 Hb_000540_040 Hb_000056_350--Hb_000540_040 Hb_000002_360 Hb_000002_360 Hb_000056_350--Hb_000002_360 Hb_009646_010--Hb_000465_260 Hb_002151_100 Hb_002151_100 Hb_009646_010--Hb_002151_100 Hb_009646_010--Hb_000110_300 Hb_009646_010--Hb_001341_200 Hb_000056_280 Hb_000056_280 Hb_009646_010--Hb_000056_280 Hb_009646_010--Hb_128589_010 Hb_005181_180 Hb_005181_180 Hb_001341_200--Hb_005181_180 Hb_004495_020 Hb_004495_020 Hb_001341_200--Hb_004495_020 Hb_029584_090 Hb_029584_090 Hb_001341_200--Hb_029584_090 Hb_004195_090 Hb_004195_090 Hb_001341_200--Hb_004195_090 Hb_000139_140 Hb_000139_140 Hb_001341_200--Hb_000139_140 Hb_026549_050 Hb_026549_050 Hb_000181_210--Hb_026549_050 Hb_000181_210--Hb_000832_280 Hb_042509_020 Hb_042509_020 Hb_000181_210--Hb_042509_020 Hb_004324_030 Hb_004324_030 Hb_000181_210--Hb_004324_030 Hb_001922_060 Hb_001922_060 Hb_000181_210--Hb_001922_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.98195 18.0573 5.92593 19.19 0.347825 0.244512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.70343 5.71828 4.45554 15.2872 5.13418

CAGE analysis