Hb_000540_040

Information

Type -
Description -
Location Contig540: 34326-35506
Sequence    

Annotation

kegg
ID tcc:TCM_001459
description hypothetical protein
nr
ID XP_011628633.1
description PREDICTED: chitinase 2 [Amborella trichopoda]
swissprot
ID -
description -
trembl
ID A0A0E0BAK1
description Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1
Gene Ontology
ID GO:0004568
description chitinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000540_040 0.0 - - PREDICTED: chitinase 2 [Amborella trichopoda]
2 Hb_000020_030 0.1298912858 - - protein binding protein, putative [Ricinus communis]
3 Hb_000181_210 0.131858164 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
4 Hb_025432_010 0.1343196998 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
5 Hb_026549_050 0.1382869084 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
6 Hb_002324_040 0.1396791577 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
7 Hb_012727_010 0.1414976222 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
8 Hb_002928_120 0.1420970403 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
9 Hb_000056_350 0.1463736839 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
10 Hb_000025_400 0.1518253293 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
11 Hb_010174_190 0.1533626503 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
12 Hb_000793_040 0.1554487059 - - PREDICTED: transcription factor LHW [Jatropha curcas]
13 Hb_000002_360 0.1592094036 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
14 Hb_042509_020 0.1603490559 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
15 Hb_003025_150 0.1610880881 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001486_060 0.1633771676 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
17 Hb_000979_160 0.163564015 - - hypothetical protein RCOM_0629030 [Ricinus communis]
18 Hb_007027_010 0.1650939697 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
19 Hb_000832_280 0.165997848 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
20 Hb_004657_080 0.16935328 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]

Gene co-expression network

sample Hb_000540_040 Hb_000540_040 Hb_000020_030 Hb_000020_030 Hb_000540_040--Hb_000020_030 Hb_000181_210 Hb_000181_210 Hb_000540_040--Hb_000181_210 Hb_025432_010 Hb_025432_010 Hb_000540_040--Hb_025432_010 Hb_026549_050 Hb_026549_050 Hb_000540_040--Hb_026549_050 Hb_002324_040 Hb_002324_040 Hb_000540_040--Hb_002324_040 Hb_012727_010 Hb_012727_010 Hb_000540_040--Hb_012727_010 Hb_007943_020 Hb_007943_020 Hb_000020_030--Hb_007943_020 Hb_002970_070 Hb_002970_070 Hb_000020_030--Hb_002970_070 Hb_002042_160 Hb_002042_160 Hb_000020_030--Hb_002042_160 Hb_022501_020 Hb_022501_020 Hb_000020_030--Hb_022501_020 Hb_003226_030 Hb_003226_030 Hb_000020_030--Hb_003226_030 Hb_005357_020 Hb_005357_020 Hb_000020_030--Hb_005357_020 Hb_000181_210--Hb_026549_050 Hb_000832_280 Hb_000832_280 Hb_000181_210--Hb_000832_280 Hb_042509_020 Hb_042509_020 Hb_000181_210--Hb_042509_020 Hb_004324_030 Hb_004324_030 Hb_000181_210--Hb_004324_030 Hb_001922_060 Hb_001922_060 Hb_000181_210--Hb_001922_060 Hb_000056_350 Hb_000056_350 Hb_000181_210--Hb_000056_350 Hb_010174_190 Hb_010174_190 Hb_025432_010--Hb_010174_190 Hb_006241_010 Hb_006241_010 Hb_025432_010--Hb_006241_010 Hb_064985_010 Hb_064985_010 Hb_025432_010--Hb_064985_010 Hb_001008_110 Hb_001008_110 Hb_025432_010--Hb_001008_110 Hb_025432_010--Hb_022501_020 Hb_042202_020 Hb_042202_020 Hb_025432_010--Hb_042202_020 Hb_026549_050--Hb_001922_060 Hb_026549_050--Hb_004324_030 Hb_000002_360 Hb_000002_360 Hb_026549_050--Hb_000002_360 Hb_000003_020 Hb_000003_020 Hb_026549_050--Hb_000003_020 Hb_026549_050--Hb_000832_280 Hb_003025_150 Hb_003025_150 Hb_002324_040--Hb_003025_150 Hb_002324_040--Hb_012727_010 Hb_002324_050 Hb_002324_050 Hb_002324_040--Hb_002324_050 Hb_003579_040 Hb_003579_040 Hb_002324_040--Hb_003579_040 Hb_064047_010 Hb_064047_010 Hb_002324_040--Hb_064047_010 Hb_004032_250 Hb_004032_250 Hb_002324_040--Hb_004032_250 Hb_012727_010--Hb_003025_150 Hb_003647_040 Hb_003647_040 Hb_012727_010--Hb_003647_040 Hb_001178_080 Hb_001178_080 Hb_012727_010--Hb_001178_080 Hb_001832_210 Hb_001832_210 Hb_012727_010--Hb_001832_210 Hb_012727_010--Hb_003579_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.827955 13.3019 3.14204 19.4504 0.103821 0.804377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.757954 0.968757 1.23875 13.3936 5.35586

CAGE analysis