Hb_000002_360

Information

Type -
Description -
Location Contig2: 547877-548218
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16470g
description hypothetical protein
nr
ID XP_006379877.1
description hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
swissprot
ID Q6NN02
description Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana GN=At4g14450 PE=2 SV=1
trembl
ID A9P9X0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s16470g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20103: 547915-548225
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_360 0.0 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
2 Hb_026549_050 0.1231827163 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
3 Hb_000832_280 0.1275190905 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
4 Hb_000866_320 0.1296081271 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_001433_160 0.1314757727 - - phosphatase 2C family protein [Populus trichocarpa]
6 Hb_003387_050 0.1318412914 - - PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
7 Hb_001922_060 0.1356914445 - - ATP binding protein, putative [Ricinus communis]
8 Hb_002999_080 0.1363350315 transcription factor TF Family: G2-like PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
9 Hb_001054_090 0.1365729071 - - Potassium channel SKOR, putative [Ricinus communis]
10 Hb_000181_210 0.1402709548 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
11 Hb_080477_080 0.1448992563 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
12 Hb_000216_050 0.1466846414 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
13 Hb_003710_020 0.1484770239 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
14 Hb_002119_040 0.150017605 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_002324_040 0.1567587937 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
16 Hb_000056_350 0.1569572639 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
17 Hb_004324_030 0.1590132821 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
18 Hb_000540_040 0.1592094036 - - PREDICTED: chitinase 2 [Amborella trichopoda]
19 Hb_001456_050 0.1593644182 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
20 Hb_000009_300 0.1594367801 - - hypothetical protein CICLE_v10024731mg [Citrus clementina]

Gene co-expression network

sample Hb_000002_360 Hb_000002_360 Hb_026549_050 Hb_026549_050 Hb_000002_360--Hb_026549_050 Hb_000832_280 Hb_000832_280 Hb_000002_360--Hb_000832_280 Hb_000866_320 Hb_000866_320 Hb_000002_360--Hb_000866_320 Hb_001433_160 Hb_001433_160 Hb_000002_360--Hb_001433_160 Hb_003387_050 Hb_003387_050 Hb_000002_360--Hb_003387_050 Hb_001922_060 Hb_001922_060 Hb_000002_360--Hb_001922_060 Hb_000181_210 Hb_000181_210 Hb_026549_050--Hb_000181_210 Hb_026549_050--Hb_001922_060 Hb_004324_030 Hb_004324_030 Hb_026549_050--Hb_004324_030 Hb_000003_020 Hb_000003_020 Hb_026549_050--Hb_000003_020 Hb_026549_050--Hb_000832_280 Hb_000832_280--Hb_000181_210 Hb_001287_060 Hb_001287_060 Hb_000832_280--Hb_001287_060 Hb_000056_350 Hb_000056_350 Hb_000832_280--Hb_000056_350 Hb_000832_280--Hb_004324_030 Hb_009627_020 Hb_009627_020 Hb_000866_320--Hb_009627_020 Hb_007625_030 Hb_007625_030 Hb_000866_320--Hb_007625_030 Hb_009838_120 Hb_009838_120 Hb_000866_320--Hb_009838_120 Hb_002999_080 Hb_002999_080 Hb_000866_320--Hb_002999_080 Hb_004659_100 Hb_004659_100 Hb_000866_320--Hb_004659_100 Hb_000009_150 Hb_000009_150 Hb_001433_160--Hb_000009_150 Hb_002284_080 Hb_002284_080 Hb_001433_160--Hb_002284_080 Hb_000009_300 Hb_000009_300 Hb_001433_160--Hb_000009_300 Hb_000024_130 Hb_000024_130 Hb_001433_160--Hb_000024_130 Hb_003670_030 Hb_003670_030 Hb_001433_160--Hb_003670_030 Hb_001221_290 Hb_001221_290 Hb_003387_050--Hb_001221_290 Hb_080477_080 Hb_080477_080 Hb_003387_050--Hb_080477_080 Hb_005054_020 Hb_005054_020 Hb_003387_050--Hb_005054_020 Hb_003387_050--Hb_000866_320 Hb_120117_010 Hb_120117_010 Hb_003387_050--Hb_120117_010 Hb_001922_060--Hb_000181_210 Hb_001922_060--Hb_000832_280 Hb_001922_060--Hb_004324_030 Hb_000567_180 Hb_000567_180 Hb_001922_060--Hb_000567_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.960457 31.8951 22.9574 61.7401 0.335331 1.75253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.94855 6.26702 2.61444 30.7246 10.7114

CAGE analysis