Hb_001287_060

Information

Type transcription factor
Description TF Family: Orphans
Location Contig1287: 123619-126671
Sequence    

Annotation

kegg
ID rcu:RCOM_1450450
description Salt-tolerance protein, putative
nr
ID XP_002512996.1
description Salt-tolerance protein, putative [Ricinus communis]
swissprot
ID C0SVM5
description B-box zinc finger protein 19 OS=Arabidopsis thaliana GN=BBX19 PE=2 SV=1
trembl
ID B9RHD7
description Salt-tolerance protein, putative OS=Ricinus communis GN=RCOM_1450450 PE=4 SV=1
Gene Ontology
ID GO:0005622
description b-box zinc finger protein 19-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08746: 123794-123892 , PASA_asmbl_08747: 124736-125190 , PASA_asmbl_08748: 126254-135922 , PASA_asmbl_08749: 126174-126743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001287_060 0.0 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
2 Hb_000832_280 0.1158535138 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
3 Hb_000216_050 0.1265475582 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
4 Hb_004324_030 0.1388145908 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
5 Hb_000181_210 0.1403413364 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
6 Hb_001456_050 0.1406804467 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
7 Hb_001922_060 0.1516648685 - - ATP binding protein, putative [Ricinus communis]
8 Hb_042509_020 0.1571056532 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
9 Hb_000005_340 0.1582905134 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
10 Hb_172426_050 0.1583622582 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
11 Hb_026549_050 0.1585128489 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
12 Hb_000002_360 0.1636509606 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
13 Hb_001341_200 0.1647295009 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
14 Hb_005181_180 0.1671593541 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004195_090 0.1717389881 - - PREDICTED: probable mitochondrial chaperone bcs1 [Jatropha curcas]
16 Hb_002025_350 0.1753087768 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
17 Hb_000057_080 0.1759893205 - - PREDICTED: probable ATP-dependent RNA helicase DDX11 [Jatropha curcas]
18 Hb_029584_090 0.1768452678 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
19 Hb_000834_040 0.177588012 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
20 Hb_002739_040 0.1783600306 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]

Gene co-expression network

sample Hb_001287_060 Hb_001287_060 Hb_000832_280 Hb_000832_280 Hb_001287_060--Hb_000832_280 Hb_000216_050 Hb_000216_050 Hb_001287_060--Hb_000216_050 Hb_004324_030 Hb_004324_030 Hb_001287_060--Hb_004324_030 Hb_000181_210 Hb_000181_210 Hb_001287_060--Hb_000181_210 Hb_001456_050 Hb_001456_050 Hb_001287_060--Hb_001456_050 Hb_001922_060 Hb_001922_060 Hb_001287_060--Hb_001922_060 Hb_000832_280--Hb_000181_210 Hb_000056_350 Hb_000056_350 Hb_000832_280--Hb_000056_350 Hb_000832_280--Hb_004324_030 Hb_000002_360 Hb_000002_360 Hb_000832_280--Hb_000002_360 Hb_026549_050 Hb_026549_050 Hb_000832_280--Hb_026549_050 Hb_000216_050--Hb_004324_030 Hb_000216_050--Hb_000002_360 Hb_000216_050--Hb_026549_050 Hb_002739_040 Hb_002739_040 Hb_000216_050--Hb_002739_040 Hb_143766_080 Hb_143766_080 Hb_000216_050--Hb_143766_080 Hb_004324_030--Hb_002739_040 Hb_042509_020 Hb_042509_020 Hb_004324_030--Hb_042509_020 Hb_004324_030--Hb_026549_050 Hb_000003_020 Hb_000003_020 Hb_004324_030--Hb_000003_020 Hb_004324_030--Hb_000181_210 Hb_000181_210--Hb_026549_050 Hb_000181_210--Hb_042509_020 Hb_000181_210--Hb_001922_060 Hb_000181_210--Hb_000056_350 Hb_001456_050--Hb_000832_280 Hb_001456_050--Hb_000002_360 Hb_001456_050--Hb_000216_050 Hb_002028_160 Hb_002028_160 Hb_001456_050--Hb_002028_160 Hb_001456_050--Hb_001922_060 Hb_001922_060--Hb_026549_050 Hb_001922_060--Hb_000832_280 Hb_001922_060--Hb_000002_360 Hb_001922_060--Hb_004324_030 Hb_000567_180 Hb_000567_180 Hb_001922_060--Hb_000567_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0408414 10.7225 9.35936 20.3268 0.196747 0.341456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.62522 3.85842 1.08669 23.4312 4.5309

CAGE analysis