Hb_000003_020

Information

Type -
Description -
Location Contig3: 10132-11403
Sequence    

Annotation

kegg
ID rcu:RCOM_1454180
description hypothetical protein
nr
ID XP_012068566.1
description PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L8M7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24468 PE=4 SV=1
Gene Ontology
ID GO:0005829
description e3 ubiquitin-protein ligase rnf25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_020 0.0 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
2 Hb_003142_060 0.0895589904 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
3 Hb_002739_040 0.1000763298 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
4 Hb_004324_030 0.1088578639 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
5 Hb_004079_100 0.1202339709 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
6 Hb_000085_380 0.1213845875 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003106_230 0.1217103407 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
8 Hb_003411_020 0.1217817509 - - alpha-glucosidase, putative [Ricinus communis]
9 Hb_000398_140 0.122462155 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
10 Hb_004421_010 0.1250394886 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
11 Hb_000024_130 0.126629478 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000318_170 0.1275384553 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
13 Hb_002307_010 0.1276351567 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
14 Hb_026549_050 0.1281492604 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
15 Hb_001189_100 0.1310265152 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Jatropha curcas]
16 Hb_003879_020 0.1310786591 - - PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]
17 Hb_001776_100 0.1333761233 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
18 Hb_000834_040 0.1335926797 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
19 Hb_001247_270 0.1361339644 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
20 Hb_008566_080 0.1365081036 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_020 Hb_000003_020 Hb_003142_060 Hb_003142_060 Hb_000003_020--Hb_003142_060 Hb_002739_040 Hb_002739_040 Hb_000003_020--Hb_002739_040 Hb_004324_030 Hb_004324_030 Hb_000003_020--Hb_004324_030 Hb_004079_100 Hb_004079_100 Hb_000003_020--Hb_004079_100 Hb_000085_380 Hb_000085_380 Hb_000003_020--Hb_000085_380 Hb_003106_230 Hb_003106_230 Hb_000003_020--Hb_003106_230 Hb_000834_040 Hb_000834_040 Hb_003142_060--Hb_000834_040 Hb_003142_060--Hb_003106_230 Hb_001008_110 Hb_001008_110 Hb_003142_060--Hb_001008_110 Hb_042202_020 Hb_042202_020 Hb_003142_060--Hb_042202_020 Hb_000024_130 Hb_000024_130 Hb_003142_060--Hb_000024_130 Hb_002739_040--Hb_004324_030 Hb_002739_040--Hb_003142_060 Hb_002739_040--Hb_004079_100 Hb_026549_050 Hb_026549_050 Hb_002739_040--Hb_026549_050 Hb_002739_040--Hb_000834_040 Hb_042509_020 Hb_042509_020 Hb_004324_030--Hb_042509_020 Hb_004324_030--Hb_026549_050 Hb_000181_210 Hb_000181_210 Hb_004324_030--Hb_000181_210 Hb_000216_050 Hb_000216_050 Hb_004324_030--Hb_000216_050 Hb_022250_160 Hb_022250_160 Hb_004079_100--Hb_022250_160 Hb_011129_020 Hb_011129_020 Hb_004079_100--Hb_011129_020 Hb_003411_020 Hb_003411_020 Hb_004079_100--Hb_003411_020 Hb_008566_080 Hb_008566_080 Hb_004079_100--Hb_008566_080 Hb_000120_320 Hb_000120_320 Hb_004079_100--Hb_000120_320 Hb_000594_160 Hb_000594_160 Hb_004079_100--Hb_000594_160 Hb_002833_020 Hb_002833_020 Hb_000085_380--Hb_002833_020 Hb_000318_170 Hb_000318_170 Hb_000085_380--Hb_000318_170 Hb_001221_390 Hb_001221_390 Hb_000085_380--Hb_001221_390 Hb_000085_380--Hb_001008_110 Hb_033234_010 Hb_033234_010 Hb_000085_380--Hb_033234_010 Hb_003106_110 Hb_003106_110 Hb_000085_380--Hb_003106_110 Hb_000731_210 Hb_000731_210 Hb_003106_230--Hb_000731_210 Hb_003106_230--Hb_000318_170 Hb_003106_230--Hb_001008_110 Hb_003106_230--Hb_000024_130 Hb_003106_230--Hb_000085_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.46897 25.6315 24.7792 47.1629 0.552505 0.703272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.06609 2.38216 1.44437 41.6342 25.2837

CAGE analysis