Hb_000834_040

Information

Type -
Description -
Location Contig834: 30460-33285
Sequence    

Annotation

kegg
ID cmo:103500590
description ras-related protein Rab7
nr
ID XP_008462166.1
description PREDICTED: ras-related protein Rab7 [Cucumis melo]
swissprot
ID O24461
description Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1
trembl
ID A0A067KFC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07249 PE=3 SV=1
Gene Ontology
ID GO:0005525
description ras-related protein rab7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59868: 30474-32240
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000834_040 0.0 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
2 Hb_003142_060 0.0904059928 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
3 Hb_003562_030 0.1118629423 - - -
4 Hb_002307_010 0.1240661501 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
5 Hb_004324_030 0.1297257969 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
6 Hb_042509_020 0.1334173932 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
7 Hb_000003_020 0.1335926797 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
8 Hb_002739_040 0.1339702854 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
9 Hb_002026_080 0.1376023224 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
10 Hb_003640_010 0.1413093751 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
11 Hb_000155_040 0.1431470219 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
12 Hb_001114_120 0.1456035193 - - protein with unknown function [Ricinus communis]
13 Hb_000317_220 0.1465733152 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011129_020 0.1482315371 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
15 Hb_001018_080 0.1482711159 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001189_100 0.1495057895 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Jatropha curcas]
17 Hb_003106_230 0.150812443 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
18 Hb_078081_010 0.1509201088 - - hypothetical protein PRUPE_ppa015726mg [Prunus persica]
19 Hb_001040_200 0.1512467189 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
20 Hb_003085_080 0.154711022 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000834_040 Hb_000834_040 Hb_003142_060 Hb_003142_060 Hb_000834_040--Hb_003142_060 Hb_003562_030 Hb_003562_030 Hb_000834_040--Hb_003562_030 Hb_002307_010 Hb_002307_010 Hb_000834_040--Hb_002307_010 Hb_004324_030 Hb_004324_030 Hb_000834_040--Hb_004324_030 Hb_042509_020 Hb_042509_020 Hb_000834_040--Hb_042509_020 Hb_000003_020 Hb_000003_020 Hb_000834_040--Hb_000003_020 Hb_003142_060--Hb_000003_020 Hb_003106_230 Hb_003106_230 Hb_003142_060--Hb_003106_230 Hb_001008_110 Hb_001008_110 Hb_003142_060--Hb_001008_110 Hb_042202_020 Hb_042202_020 Hb_003142_060--Hb_042202_020 Hb_000024_130 Hb_000024_130 Hb_003142_060--Hb_000024_130 Hb_001040_200 Hb_001040_200 Hb_003562_030--Hb_001040_200 Hb_188281_050 Hb_188281_050 Hb_003562_030--Hb_188281_050 Hb_000112_050 Hb_000112_050 Hb_003562_030--Hb_000112_050 Hb_003640_010 Hb_003640_010 Hb_003562_030--Hb_003640_010 Hb_001047_170 Hb_001047_170 Hb_003562_030--Hb_001047_170 Hb_001114_120 Hb_001114_120 Hb_002307_010--Hb_001114_120 Hb_001018_080 Hb_001018_080 Hb_002307_010--Hb_001018_080 Hb_011537_020 Hb_011537_020 Hb_002307_010--Hb_011537_020 Hb_002307_010--Hb_000112_050 Hb_003847_170 Hb_003847_170 Hb_002307_010--Hb_003847_170 Hb_002739_040 Hb_002739_040 Hb_004324_030--Hb_002739_040 Hb_004324_030--Hb_042509_020 Hb_026549_050 Hb_026549_050 Hb_004324_030--Hb_026549_050 Hb_004324_030--Hb_000003_020 Hb_000181_210 Hb_000181_210 Hb_004324_030--Hb_000181_210 Hb_000216_050 Hb_000216_050 Hb_004324_030--Hb_000216_050 Hb_042509_020--Hb_000181_210 Hb_000832_280 Hb_000832_280 Hb_042509_020--Hb_000832_280 Hb_042509_020--Hb_026549_050 Hb_001159_170 Hb_001159_170 Hb_042509_020--Hb_001159_170 Hb_000003_020--Hb_002739_040 Hb_004079_100 Hb_004079_100 Hb_000003_020--Hb_004079_100 Hb_000085_380 Hb_000085_380 Hb_000003_020--Hb_000085_380 Hb_000003_020--Hb_003106_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.183679 7.43931 6.55573 13.7826 0.347083 0.260962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.96888 0.481274 1.03315 21.131 6.64344

CAGE analysis