Hb_003847_170

Information

Type -
Description -
Location Contig3847: 199935-204086
Sequence    

Annotation

kegg
ID rcu:RCOM_1312580
description alpha,alpha-trehalase, putative (EC:3.2.1.28)
nr
ID XP_012086663.1
description PREDICTED: trehalase isoform X1 [Jatropha curcas]
swissprot
ID Q9SU50
description Trehalase OS=Arabidopsis thaliana GN=TRE1 PE=2 SV=1
trembl
ID A0A067K0F1
description Trehalase OS=Jatropha curcas GN=JCGZ_20405 PE=3 SV=1
Gene Ontology
ID GO:0004555
description probable trehalase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38733: 200573-201431
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003847_170 0.0 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
2 Hb_000112_050 0.1227918167 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
3 Hb_001470_040 0.1233517241 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
4 Hb_002307_010 0.1248010593 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
5 Hb_001963_020 0.1326835349 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
6 Hb_002475_030 0.1340485347 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001114_120 0.1439355558 - - protein with unknown function [Ricinus communis]
8 Hb_011537_020 0.1481854338 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
9 Hb_003085_080 0.1484533391 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_001329_110 0.1501485963 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
11 Hb_001018_080 0.1506906989 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000203_080 0.1513121848 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
13 Hb_188281_050 0.1522160897 - - PREDICTED: solute carrier family 35 member F1-like isoform X1 [Vitis vinifera]
14 Hb_001493_020 0.1522493627 - - leucine-rich repeat receptor-like protein kinase [Manihot esculenta]
15 Hb_003562_030 0.152869732 - - -
16 Hb_003842_010 0.1561163334 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_004128_090 0.1592431538 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
18 Hb_001514_070 0.1600917024 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000215_250 0.1606189941 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
20 Hb_000834_040 0.1610715243 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]

Gene co-expression network

sample Hb_003847_170 Hb_003847_170 Hb_000112_050 Hb_000112_050 Hb_003847_170--Hb_000112_050 Hb_001470_040 Hb_001470_040 Hb_003847_170--Hb_001470_040 Hb_002307_010 Hb_002307_010 Hb_003847_170--Hb_002307_010 Hb_001963_020 Hb_001963_020 Hb_003847_170--Hb_001963_020 Hb_002475_030 Hb_002475_030 Hb_003847_170--Hb_002475_030 Hb_001114_120 Hb_001114_120 Hb_003847_170--Hb_001114_120 Hb_000112_050--Hb_001114_120 Hb_003847_050 Hb_003847_050 Hb_000112_050--Hb_003847_050 Hb_001568_010 Hb_001568_010 Hb_000112_050--Hb_001568_010 Hb_000203_080 Hb_000203_080 Hb_000112_050--Hb_000203_080 Hb_001040_200 Hb_001040_200 Hb_000112_050--Hb_001040_200 Hb_002448_020 Hb_002448_020 Hb_000112_050--Hb_002448_020 Hb_001470_040--Hb_001963_020 Hb_000276_030 Hb_000276_030 Hb_001470_040--Hb_000276_030 Hb_001514_070 Hb_001514_070 Hb_001470_040--Hb_001514_070 Hb_007313_010 Hb_007313_010 Hb_001470_040--Hb_007313_010 Hb_000963_010 Hb_000963_010 Hb_001470_040--Hb_000963_010 Hb_000393_030 Hb_000393_030 Hb_001470_040--Hb_000393_030 Hb_002307_010--Hb_001114_120 Hb_001018_080 Hb_001018_080 Hb_002307_010--Hb_001018_080 Hb_011537_020 Hb_011537_020 Hb_002307_010--Hb_011537_020 Hb_002307_010--Hb_000112_050 Hb_000834_040 Hb_000834_040 Hb_002307_010--Hb_000834_040 Hb_000003_510 Hb_000003_510 Hb_001963_020--Hb_000003_510 Hb_001963_020--Hb_000276_030 Hb_001369_620 Hb_001369_620 Hb_001963_020--Hb_001369_620 Hb_001053_110 Hb_001053_110 Hb_001963_020--Hb_001053_110 Hb_010174_170 Hb_010174_170 Hb_001963_020--Hb_010174_170 Hb_004128_090 Hb_004128_090 Hb_002475_030--Hb_004128_090 Hb_004010_090 Hb_004010_090 Hb_002475_030--Hb_004010_090 Hb_009150_060 Hb_009150_060 Hb_002475_030--Hb_009150_060 Hb_003085_080 Hb_003085_080 Hb_002475_030--Hb_003085_080 Hb_003842_010 Hb_003842_010 Hb_002475_030--Hb_003842_010 Hb_010839_010 Hb_010839_010 Hb_002475_030--Hb_010839_010 Hb_001114_120--Hb_000203_080 Hb_001114_120--Hb_003847_050 Hb_001114_120--Hb_002448_020 Hb_007386_030 Hb_007386_030 Hb_001114_120--Hb_007386_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0413863 0.3624 0.360763 0.590048 0.0484324 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0185065 0 1.18583 0.351605

CAGE analysis