Hb_001963_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1963: 37219-40491
Sequence    

Annotation

kegg
ID rcu:RCOM_0454760
description hypothetical protein
nr
ID XP_002529484.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8W4J9
description Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2
trembl
ID B9SU15
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0454760 PE=4 SV=1
Gene Ontology
ID GO:0043531
description inactive disease susceptibility protein lov1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19678: 37083-37306 , PASA_asmbl_19679: 37398-37802 , PASA_asmbl_19683: 39589-40197
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001963_020 0.0 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
2 Hb_001470_040 0.0828823816 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
3 Hb_000003_510 0.0985253361 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
4 Hb_000276_030 0.110595532 - - dimethylaniline monooxygenase, putative [Ricinus communis]
5 Hb_001369_620 0.1229133717 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
6 Hb_001053_110 0.1277998568 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
7 Hb_010174_170 0.1313578369 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 [Jatropha curcas]
8 Hb_003847_170 0.1326835349 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
9 Hb_000963_010 0.1335588949 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
10 Hb_000300_170 0.135440699 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
11 Hb_005489_120 0.1377494234 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
12 Hb_001514_070 0.1400337894 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_001158_080 0.1414893298 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
14 Hb_003805_080 0.1421515358 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
15 Hb_003787_060 0.1424843698 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
16 Hb_000032_560 0.1452807693 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
17 Hb_003562_030 0.1468744308 - - -
18 Hb_001493_020 0.1470052368 - - leucine-rich repeat receptor-like protein kinase [Manihot esculenta]
19 Hb_000112_050 0.1477165715 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
20 Hb_000934_290 0.1477759477 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001963_020 Hb_001963_020 Hb_001470_040 Hb_001470_040 Hb_001963_020--Hb_001470_040 Hb_000003_510 Hb_000003_510 Hb_001963_020--Hb_000003_510 Hb_000276_030 Hb_000276_030 Hb_001963_020--Hb_000276_030 Hb_001369_620 Hb_001369_620 Hb_001963_020--Hb_001369_620 Hb_001053_110 Hb_001053_110 Hb_001963_020--Hb_001053_110 Hb_010174_170 Hb_010174_170 Hb_001963_020--Hb_010174_170 Hb_001470_040--Hb_000276_030 Hb_001514_070 Hb_001514_070 Hb_001470_040--Hb_001514_070 Hb_007313_010 Hb_007313_010 Hb_001470_040--Hb_007313_010 Hb_000963_010 Hb_000963_010 Hb_001470_040--Hb_000963_010 Hb_000393_030 Hb_000393_030 Hb_001470_040--Hb_000393_030 Hb_000003_510--Hb_001369_620 Hb_000003_510--Hb_000276_030 Hb_000003_510--Hb_001470_040 Hb_002072_020 Hb_002072_020 Hb_000003_510--Hb_002072_020 Hb_000003_510--Hb_010174_170 Hb_000487_240 Hb_000487_240 Hb_000276_030--Hb_000487_240 Hb_003734_120 Hb_003734_120 Hb_000276_030--Hb_003734_120 Hb_005211_090 Hb_005211_090 Hb_000276_030--Hb_005211_090 Hb_003787_060 Hb_003787_060 Hb_000276_030--Hb_003787_060 Hb_000934_290 Hb_000934_290 Hb_000276_030--Hb_000934_290 Hb_001369_620--Hb_001053_110 Hb_002016_020 Hb_002016_020 Hb_001369_620--Hb_002016_020 Hb_001369_620--Hb_003734_120 Hb_003805_080 Hb_003805_080 Hb_001369_620--Hb_003805_080 Hb_129637_010 Hb_129637_010 Hb_001053_110--Hb_129637_010 Hb_000300_170 Hb_000300_170 Hb_001053_110--Hb_000300_170 Hb_005489_120 Hb_005489_120 Hb_001053_110--Hb_005489_120 Hb_000417_350 Hb_000417_350 Hb_001053_110--Hb_000417_350 Hb_005333_120 Hb_005333_120 Hb_001053_110--Hb_005333_120 Hb_000022_280 Hb_000022_280 Hb_010174_170--Hb_000022_280 Hb_004129_110 Hb_004129_110 Hb_010174_170--Hb_004129_110 Hb_001723_070 Hb_001723_070 Hb_010174_170--Hb_001723_070 Hb_000009_130 Hb_000009_130 Hb_010174_170--Hb_000009_130 Hb_010519_020 Hb_010519_020 Hb_010174_170--Hb_010519_020 Hb_001221_480 Hb_001221_480 Hb_010174_170--Hb_001221_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.316333 2.46419 1.46178 4.12818 0.143878 0.0317066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0598225 8.53423 1.24567

CAGE analysis