Hb_000009_130

Information

Type -
Description -
Location Contig9: 132795-134243
Sequence    

Annotation

kegg
ID pop:POPTR_0007s12410g
description POPTRDRAFT_871199; hypothetical protein
nr
ID XP_002310204.2
description hypothetical protein POPTR_0007s12410g [Populus trichocarpa]
swissprot
ID Q40287
description Anthocyanidin 3-O-glucosyltransferase 5 OS=Manihot esculenta GN=GT5 PE=2 SV=1
trembl
ID B9HEP0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12410g PE=3 SV=2
Gene Ontology
ID GO:0016758
description udp-glycosyltransferase 72e1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61841: 133071-133732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_130 0.0 - - hypothetical protein POPTR_0007s12410g [Populus trichocarpa]
2 Hb_166009_010 0.0954772096 - - carbonyl reductase, putative [Ricinus communis]
3 Hb_004129_110 0.1037506022 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
4 Hb_011472_020 0.1084490616 - - PREDICTED: mucin-17-like [Jatropha curcas]
5 Hb_010519_020 0.1127269047 - - hypothetical protein JCGZ_19028 [Jatropha curcas]
6 Hb_001421_010 0.1156795855 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
7 Hb_000022_280 0.1174446999 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
8 Hb_010174_170 0.1180513588 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 [Jatropha curcas]
9 Hb_001318_120 0.118837204 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
10 Hb_002110_060 0.1233611667 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
11 Hb_162286_030 0.1254751726 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
12 Hb_000227_370 0.1259858835 - - sugar transporter, putative [Ricinus communis]
13 Hb_004447_020 0.1281755342 - - carbohydrate binding protein, putative [Ricinus communis]
14 Hb_175758_010 0.128950542 - - PREDICTED: aspartic proteinase A1-like isoform X2 [Jatropha curcas]
15 Hb_000335_050 0.1312340403 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
16 Hb_001102_270 0.133107775 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
17 Hb_006711_020 0.1351361494 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
18 Hb_001723_070 0.1369955581 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
19 Hb_000836_390 0.1384859855 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
20 Hb_008215_010 0.1408765887 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000009_130 Hb_000009_130 Hb_166009_010 Hb_166009_010 Hb_000009_130--Hb_166009_010 Hb_004129_110 Hb_004129_110 Hb_000009_130--Hb_004129_110 Hb_011472_020 Hb_011472_020 Hb_000009_130--Hb_011472_020 Hb_010519_020 Hb_010519_020 Hb_000009_130--Hb_010519_020 Hb_001421_010 Hb_001421_010 Hb_000009_130--Hb_001421_010 Hb_000022_280 Hb_000022_280 Hb_000009_130--Hb_000022_280 Hb_039022_020 Hb_039022_020 Hb_166009_010--Hb_039022_020 Hb_166009_010--Hb_004129_110 Hb_166009_010--Hb_011472_020 Hb_003376_300 Hb_003376_300 Hb_166009_010--Hb_003376_300 Hb_166009_010--Hb_000022_280 Hb_004129_110--Hb_000022_280 Hb_010174_170 Hb_010174_170 Hb_004129_110--Hb_010174_170 Hb_000300_170 Hb_000300_170 Hb_004129_110--Hb_000300_170 Hb_004129_110--Hb_003376_300 Hb_005276_220 Hb_005276_220 Hb_011472_020--Hb_005276_220 Hb_011472_020--Hb_010519_020 Hb_001318_120 Hb_001318_120 Hb_011472_020--Hb_001318_120 Hb_011472_020--Hb_001421_010 Hb_000403_110 Hb_000403_110 Hb_011472_020--Hb_000403_110 Hb_011472_020--Hb_039022_020 Hb_010519_020--Hb_001318_120 Hb_175758_010 Hb_175758_010 Hb_010519_020--Hb_175758_010 Hb_010519_020--Hb_001421_010 Hb_006711_020 Hb_006711_020 Hb_010519_020--Hb_006711_020 Hb_010519_020--Hb_000403_110 Hb_001421_010--Hb_175758_010 Hb_001421_010--Hb_000403_110 Hb_001329_110 Hb_001329_110 Hb_001421_010--Hb_001329_110 Hb_008783_020 Hb_008783_020 Hb_001421_010--Hb_008783_020 Hb_000022_280--Hb_000300_170 Hb_000022_280--Hb_010174_170 Hb_005489_120 Hb_005489_120 Hb_000022_280--Hb_005489_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.17133 1.53867 1.41816 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0650024 0 0 3.83938 0.427302

CAGE analysis