Hb_010174_170

Information

Type -
Description -
Location Contig10174: 145320-150060
Sequence    

Annotation

kegg
ID rcu:RCOM_1082550
description protein with unknown function (EC:2.7.10.2)
nr
ID XP_012085570.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 [Jatropha curcas]
swissprot
ID C0LGI2
description Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1
trembl
ID B9RMQ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1082550 PE=3 SV=1
Gene Ontology
ID GO:0004674
description leucine-rich repeat family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00855: 145288-150076 , PASA_asmbl_00856: 145311-147078 , PASA_asmbl_00857: 148040-150012 , PASA_asmbl_00858: 149658-149988
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010174_170 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 [Jatropha curcas]
2 Hb_000022_280 0.0995842092 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
3 Hb_004129_110 0.1085282942 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
4 Hb_001723_070 0.11280496 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
5 Hb_000009_130 0.1180513588 - - hypothetical protein POPTR_0007s12410g [Populus trichocarpa]
6 Hb_010519_020 0.1193677074 - - hypothetical protein JCGZ_19028 [Jatropha curcas]
7 Hb_001221_480 0.1231387963 - - metal ion binding protein, putative [Ricinus communis]
8 Hb_000300_170 0.1243466499 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
9 Hb_000276_030 0.1243708653 - - dimethylaniline monooxygenase, putative [Ricinus communis]
10 Hb_006711_020 0.1244943378 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
11 Hb_000003_510 0.1279145045 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
12 Hb_162286_030 0.129565444 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
13 Hb_001963_020 0.1313578369 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
14 Hb_001470_040 0.1359960061 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
15 Hb_001660_040 0.1369931478 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
16 Hb_004447_020 0.1374603484 - - carbohydrate binding protein, putative [Ricinus communis]
17 Hb_002110_060 0.1435295042 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
18 Hb_008554_090 0.1440285689 - - zinc finger protein, putative [Ricinus communis]
19 Hb_011472_020 0.1449229339 - - PREDICTED: mucin-17-like [Jatropha curcas]
20 Hb_000317_230 0.1458483516 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_010174_170 Hb_010174_170 Hb_000022_280 Hb_000022_280 Hb_010174_170--Hb_000022_280 Hb_004129_110 Hb_004129_110 Hb_010174_170--Hb_004129_110 Hb_001723_070 Hb_001723_070 Hb_010174_170--Hb_001723_070 Hb_000009_130 Hb_000009_130 Hb_010174_170--Hb_000009_130 Hb_010519_020 Hb_010519_020 Hb_010174_170--Hb_010519_020 Hb_001221_480 Hb_001221_480 Hb_010174_170--Hb_001221_480 Hb_000022_280--Hb_004129_110 Hb_000300_170 Hb_000300_170 Hb_000022_280--Hb_000300_170 Hb_166009_010 Hb_166009_010 Hb_000022_280--Hb_166009_010 Hb_000022_280--Hb_000009_130 Hb_005489_120 Hb_005489_120 Hb_000022_280--Hb_005489_120 Hb_004129_110--Hb_166009_010 Hb_004129_110--Hb_000009_130 Hb_004129_110--Hb_000300_170 Hb_003376_300 Hb_003376_300 Hb_004129_110--Hb_003376_300 Hb_162286_030 Hb_162286_030 Hb_001723_070--Hb_162286_030 Hb_009778_050 Hb_009778_050 Hb_001723_070--Hb_009778_050 Hb_004079_110 Hb_004079_110 Hb_001723_070--Hb_004079_110 Hb_002110_060 Hb_002110_060 Hb_001723_070--Hb_002110_060 Hb_001621_020 Hb_001621_020 Hb_001723_070--Hb_001621_020 Hb_000009_130--Hb_166009_010 Hb_011472_020 Hb_011472_020 Hb_000009_130--Hb_011472_020 Hb_000009_130--Hb_010519_020 Hb_001421_010 Hb_001421_010 Hb_000009_130--Hb_001421_010 Hb_001318_120 Hb_001318_120 Hb_010519_020--Hb_001318_120 Hb_175758_010 Hb_175758_010 Hb_010519_020--Hb_175758_010 Hb_010519_020--Hb_001421_010 Hb_010519_020--Hb_011472_020 Hb_006711_020 Hb_006711_020 Hb_010519_020--Hb_006711_020 Hb_000403_110 Hb_000403_110 Hb_010519_020--Hb_000403_110 Hb_003807_020 Hb_003807_020 Hb_001221_480--Hb_003807_020 Hb_000649_030 Hb_000649_030 Hb_001221_480--Hb_000649_030 Hb_004447_020 Hb_004447_020 Hb_001221_480--Hb_004447_020 Hb_111582_010 Hb_111582_010 Hb_001221_480--Hb_111582_010 Hb_000335_050 Hb_000335_050 Hb_001221_480--Hb_000335_050 Hb_001454_410 Hb_001454_410 Hb_001221_480--Hb_001454_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.481999 12.7043 10.0165 12.4369 0.330372 0.0935485
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.178152 0.0467326 0.0717215 34.7118 2.78058

CAGE analysis