Hb_162286_030

Information

Type -
Description -
Location Contig162286: 13692-22193
Sequence    

Annotation

kegg
ID rcu:RCOM_0519620
description ATP binding protein, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_012092431.1
description PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
swissprot
ID C0LGN2
description Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 OS=Arabidopsis thaliana GN=LRR-RLK PE=2 SV=1
trembl
ID B9SS08
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0519620 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable lrr receptor-like serine threonine-protein kinase at1g07650 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14670: 13896-14650 , PASA_asmbl_14671: 15607-15853 , PASA_asmbl_14672: 17137-17474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162286_030 0.0 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
2 Hb_001723_070 0.0731115794 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
3 Hb_001621_020 0.1186698206 - - -
4 Hb_002110_060 0.1221554902 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
5 Hb_000009_130 0.1254751726 - - hypothetical protein POPTR_0007s12410g [Populus trichocarpa]
6 Hb_010174_170 0.129565444 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 [Jatropha curcas]
7 Hb_008215_010 0.129834962 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004079_110 0.1329604677 - - PREDICTED: uncharacterized protein LOC100257802 [Vitis vinifera]
9 Hb_004129_110 0.1340882112 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
10 Hb_009778_050 0.1363708917 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
11 Hb_006711_020 0.1389694757 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
12 Hb_000046_590 0.1399633369 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
13 Hb_010519_020 0.1407546785 - - hypothetical protein JCGZ_19028 [Jatropha curcas]
14 Hb_002686_390 0.1411443885 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
15 Hb_004447_020 0.1414480073 - - carbohydrate binding protein, putative [Ricinus communis]
16 Hb_000227_370 0.1440239774 - - sugar transporter, putative [Ricinus communis]
17 Hb_000836_390 0.1456308329 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
18 Hb_011472_020 0.1462087799 - - PREDICTED: mucin-17-like [Jatropha curcas]
19 Hb_000625_060 0.1466273135 - - Protein P21, putative [Ricinus communis]
20 Hb_001221_480 0.1468649701 - - metal ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_162286_030 Hb_162286_030 Hb_001723_070 Hb_001723_070 Hb_162286_030--Hb_001723_070 Hb_001621_020 Hb_001621_020 Hb_162286_030--Hb_001621_020 Hb_002110_060 Hb_002110_060 Hb_162286_030--Hb_002110_060 Hb_000009_130 Hb_000009_130 Hb_162286_030--Hb_000009_130 Hb_010174_170 Hb_010174_170 Hb_162286_030--Hb_010174_170 Hb_008215_010 Hb_008215_010 Hb_162286_030--Hb_008215_010 Hb_009778_050 Hb_009778_050 Hb_001723_070--Hb_009778_050 Hb_001723_070--Hb_010174_170 Hb_004079_110 Hb_004079_110 Hb_001723_070--Hb_004079_110 Hb_001723_070--Hb_002110_060 Hb_001723_070--Hb_001621_020 Hb_001355_110 Hb_001355_110 Hb_001621_020--Hb_001355_110 Hb_006949_030 Hb_006949_030 Hb_001621_020--Hb_006949_030 Hb_001102_270 Hb_001102_270 Hb_001621_020--Hb_001102_270 Hb_001621_020--Hb_004079_110 Hb_001266_020 Hb_001266_020 Hb_001621_020--Hb_001266_020 Hb_008554_090 Hb_008554_090 Hb_002110_060--Hb_008554_090 Hb_009070_030 Hb_009070_030 Hb_002110_060--Hb_009070_030 Hb_002110_060--Hb_000009_130 Hb_005730_070 Hb_005730_070 Hb_002110_060--Hb_005730_070 Hb_001454_290 Hb_001454_290 Hb_002110_060--Hb_001454_290 Hb_166009_010 Hb_166009_010 Hb_000009_130--Hb_166009_010 Hb_004129_110 Hb_004129_110 Hb_000009_130--Hb_004129_110 Hb_011472_020 Hb_011472_020 Hb_000009_130--Hb_011472_020 Hb_010519_020 Hb_010519_020 Hb_000009_130--Hb_010519_020 Hb_001421_010 Hb_001421_010 Hb_000009_130--Hb_001421_010 Hb_000022_280 Hb_000022_280 Hb_000009_130--Hb_000022_280 Hb_010174_170--Hb_000022_280 Hb_010174_170--Hb_004129_110 Hb_010174_170--Hb_000009_130 Hb_010174_170--Hb_010519_020 Hb_001221_480 Hb_001221_480 Hb_010174_170--Hb_001221_480 Hb_000836_390 Hb_000836_390 Hb_008215_010--Hb_000836_390 Hb_007765_140 Hb_007765_140 Hb_008215_010--Hb_007765_140 Hb_000120_070 Hb_000120_070 Hb_008215_010--Hb_000120_070 Hb_000075_110 Hb_000075_110 Hb_008215_010--Hb_000075_110 Hb_000046_590 Hb_000046_590 Hb_008215_010--Hb_000046_590 Hb_165404_010 Hb_165404_010 Hb_008215_010--Hb_165404_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0514684 3.10218 2.39615 1.33023 0.0321983 0.0352981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0574838 5.55531 0.363386

CAGE analysis