Hb_004129_110

Information

Type -
Description -
Location Contig4129: 84856-92552
Sequence    

Annotation

kegg
ID rcu:RCOM_0235520
description Calcium-activated outward-rectifying potassium channel, putative
nr
ID XP_002534067.1
description Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
swissprot
ID Q9SVV6
description Two-pore potassium channel 3 OS=Arabidopsis thaliana GN=TPK3 PE=2 SV=1
trembl
ID B9T748
description Calcium-activated outward-rectifying potassium channel, putative OS=Ricinus communis GN=RCOM_0235520 PE=4 SV=1
Gene Ontology
ID GO:0016021
description two-pore potassium channel 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40893: 91136-91630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004129_110 0.0 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
2 Hb_000022_280 0.0619671071 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
3 Hb_166009_010 0.0973528962 - - carbonyl reductase, putative [Ricinus communis]
4 Hb_000009_130 0.1037506022 - - hypothetical protein POPTR_0007s12410g [Populus trichocarpa]
5 Hb_010174_170 0.1085282942 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 [Jatropha curcas]
6 Hb_000300_170 0.1108179104 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
7 Hb_003376_300 0.1219639075 - - Aquaporin PIP2.2, putative [Ricinus communis]
8 Hb_002110_060 0.1292069391 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
9 Hb_162286_030 0.1340882112 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
10 Hb_010519_020 0.1382333198 - - hypothetical protein JCGZ_19028 [Jatropha curcas]
11 Hb_004447_020 0.140412349 - - carbohydrate binding protein, putative [Ricinus communis]
12 Hb_001421_010 0.1425016701 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
13 Hb_010926_010 0.1435286706 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
14 Hb_000335_050 0.1459137058 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
15 Hb_008695_130 0.1471073387 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003788_010 0.1472884182 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
17 Hb_111147_010 0.1479620595 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005489_120 0.1483493817 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
19 Hb_001922_020 0.1484317117 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002028_160 0.1493424071 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Populus euphratica]

Gene co-expression network

sample Hb_004129_110 Hb_004129_110 Hb_000022_280 Hb_000022_280 Hb_004129_110--Hb_000022_280 Hb_166009_010 Hb_166009_010 Hb_004129_110--Hb_166009_010 Hb_000009_130 Hb_000009_130 Hb_004129_110--Hb_000009_130 Hb_010174_170 Hb_010174_170 Hb_004129_110--Hb_010174_170 Hb_000300_170 Hb_000300_170 Hb_004129_110--Hb_000300_170 Hb_003376_300 Hb_003376_300 Hb_004129_110--Hb_003376_300 Hb_000022_280--Hb_000300_170 Hb_000022_280--Hb_010174_170 Hb_000022_280--Hb_166009_010 Hb_000022_280--Hb_000009_130 Hb_005489_120 Hb_005489_120 Hb_000022_280--Hb_005489_120 Hb_166009_010--Hb_000009_130 Hb_039022_020 Hb_039022_020 Hb_166009_010--Hb_039022_020 Hb_011472_020 Hb_011472_020 Hb_166009_010--Hb_011472_020 Hb_166009_010--Hb_003376_300 Hb_000009_130--Hb_011472_020 Hb_010519_020 Hb_010519_020 Hb_000009_130--Hb_010519_020 Hb_001421_010 Hb_001421_010 Hb_000009_130--Hb_001421_010 Hb_001723_070 Hb_001723_070 Hb_010174_170--Hb_001723_070 Hb_010174_170--Hb_000009_130 Hb_010174_170--Hb_010519_020 Hb_001221_480 Hb_001221_480 Hb_010174_170--Hb_001221_480 Hb_000300_170--Hb_005489_120 Hb_001053_110 Hb_001053_110 Hb_000300_170--Hb_001053_110 Hb_007313_010 Hb_007313_010 Hb_000300_170--Hb_007313_010 Hb_001856_160 Hb_001856_160 Hb_000300_170--Hb_001856_160 Hb_000454_200 Hb_000454_200 Hb_003376_300--Hb_000454_200 Hb_005087_030 Hb_005087_030 Hb_003376_300--Hb_005087_030 Hb_002450_180 Hb_002450_180 Hb_003376_300--Hb_002450_180 Hb_002028_160 Hb_002028_160 Hb_003376_300--Hb_002028_160 Hb_003376_300--Hb_001856_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00820679 2.00516 1.43343 1.94949 0.00821624 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0279191 3.65736 0.280142

CAGE analysis