Hb_000120_070

Information

Type -
Description -
Location Contig120: 51581-56304
Sequence    

Annotation

kegg
ID rcu:RCOM_0612520
description ubiquitin-protein ligase, putative
nr
ID XP_012067551.1
description PREDICTED: uncharacterized protein LOC105630351 [Jatropha curcas]
swissprot
ID Q6ZQM0
description E3 ubiquitin-protein ligase rififylin OS=Mus musculus GN=Rffl PE=1 SV=1
trembl
ID A0A067LGL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08465 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06051: 52028-53393 , PASA_asmbl_06053: 54770-55237 , PASA_asmbl_06054: 55450-56089
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_070 0.0 - - PREDICTED: uncharacterized protein LOC105630351 [Jatropha curcas]
2 Hb_000836_390 0.0780198909 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
3 Hb_007765_140 0.0852569291 - - PREDICTED: protein NRT1/ PTR FAMILY 8.1-like [Jatropha curcas]
4 Hb_008215_010 0.0939600947 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000075_110 0.0960704775 - - aldo-keto reductase, putative [Ricinus communis]
6 Hb_003556_070 0.1035933786 - - metal ion binding protein, putative [Ricinus communis]
7 Hb_006970_150 0.1091493194 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
8 Hb_165404_010 0.1123064531 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
9 Hb_075449_040 0.1133177861 - - PREDICTED: meiotic recombination protein SPO11-1 [Jatropha curcas]
10 Hb_000280_110 0.11440148 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
11 Hb_000771_030 0.1171025697 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
12 Hb_065230_010 0.1184494716 - - PREDICTED: uncharacterized protein LOC100814166 isoform X1 [Glycine max]
13 Hb_000977_090 0.1213842513 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
14 Hb_068332_010 0.1231813203 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_001894_040 0.1249074509 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
16 Hb_004007_120 0.125035126 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform X1 [Populus euphratica]
17 Hb_009581_040 0.125964421 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
18 Hb_008406_020 0.1291119407 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
19 Hb_001636_010 0.1295666004 - - hypothetical protein JCGZ_01264 [Jatropha curcas]
20 Hb_008948_080 0.1298498907 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_070 Hb_000120_070 Hb_000836_390 Hb_000836_390 Hb_000120_070--Hb_000836_390 Hb_007765_140 Hb_007765_140 Hb_000120_070--Hb_007765_140 Hb_008215_010 Hb_008215_010 Hb_000120_070--Hb_008215_010 Hb_000075_110 Hb_000075_110 Hb_000120_070--Hb_000075_110 Hb_003556_070 Hb_003556_070 Hb_000120_070--Hb_003556_070 Hb_006970_150 Hb_006970_150 Hb_000120_070--Hb_006970_150 Hb_000836_390--Hb_007765_140 Hb_000836_390--Hb_008215_010 Hb_075449_040 Hb_075449_040 Hb_000836_390--Hb_075449_040 Hb_003376_200 Hb_003376_200 Hb_000836_390--Hb_003376_200 Hb_000836_390--Hb_000075_110 Hb_165404_010 Hb_165404_010 Hb_007765_140--Hb_165404_010 Hb_007765_140--Hb_000075_110 Hb_007765_140--Hb_075449_040 Hb_007765_140--Hb_008215_010 Hb_008215_010--Hb_000075_110 Hb_000046_590 Hb_000046_590 Hb_008215_010--Hb_000046_590 Hb_008215_010--Hb_165404_010 Hb_000075_110--Hb_165404_010 Hb_000598_020 Hb_000598_020 Hb_000075_110--Hb_000598_020 Hb_000075_110--Hb_006970_150 Hb_073119_010 Hb_073119_010 Hb_003556_070--Hb_073119_010 Hb_000098_250 Hb_000098_250 Hb_003556_070--Hb_000098_250 Hb_017604_020 Hb_017604_020 Hb_003556_070--Hb_017604_020 Hb_000280_110 Hb_000280_110 Hb_003556_070--Hb_000280_110 Hb_000977_090 Hb_000977_090 Hb_003556_070--Hb_000977_090 Hb_033045_010 Hb_033045_010 Hb_006970_150--Hb_033045_010 Hb_002518_270 Hb_002518_270 Hb_006970_150--Hb_002518_270 Hb_000265_020 Hb_000265_020 Hb_006970_150--Hb_000265_020 Hb_008948_080 Hb_008948_080 Hb_006970_150--Hb_008948_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0644183 19.8068 6.07737 6.24268 0.0269234 0.0687031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.196047 0.171397 0.260239 13.8792 2.24787

CAGE analysis