Hb_003556_070

Information

Type -
Description -
Location Contig3556: 55792-58080
Sequence    

Annotation

kegg
ID rcu:RCOM_0083440
description metal ion binding protein, putative
nr
ID XP_002534419.1
description metal ion binding protein, putative [Ricinus communis]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID B9T850
description Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_0083440 PE=4 SV=1
Gene Ontology
ID GO:0046872
description heavy metal-associated isoprenylated plant protein 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36801: 55794-58100 , PASA_asmbl_36802: 56520-56842
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003556_070 0.0 - - metal ion binding protein, putative [Ricinus communis]
2 Hb_073119_010 0.0841477353 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
3 Hb_000098_250 0.0991762528 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
4 Hb_017604_020 0.1025014279 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
5 Hb_000120_070 0.1035933786 - - PREDICTED: uncharacterized protein LOC105630351 [Jatropha curcas]
6 Hb_000280_110 0.1064928914 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
7 Hb_000977_090 0.1091578931 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
8 Hb_020648_020 0.1145806493 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
9 Hb_002410_010 0.1181255477 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
10 Hb_009510_050 0.1231553109 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000771_030 0.1244158658 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
12 Hb_002276_100 0.1266297514 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
13 Hb_065230_010 0.1290932639 - - PREDICTED: uncharacterized protein LOC100814166 isoform X1 [Glycine max]
14 Hb_008406_020 0.1299457071 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
15 Hb_082870_010 0.1300228461 - - Disease resistance protein RFL1, putative [Ricinus communis]
16 Hb_068332_010 0.1303706609 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_001073_060 0.1313945802 - - phosphate transporter 1 [Hevea brasiliensis]
18 Hb_006970_150 0.1326077578 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
19 Hb_000075_110 0.1331238133 - - aldo-keto reductase, putative [Ricinus communis]
20 Hb_009581_040 0.1332501403 - - hypothetical protein B456_011G052100 [Gossypium raimondii]

Gene co-expression network

sample Hb_003556_070 Hb_003556_070 Hb_073119_010 Hb_073119_010 Hb_003556_070--Hb_073119_010 Hb_000098_250 Hb_000098_250 Hb_003556_070--Hb_000098_250 Hb_017604_020 Hb_017604_020 Hb_003556_070--Hb_017604_020 Hb_000120_070 Hb_000120_070 Hb_003556_070--Hb_000120_070 Hb_000280_110 Hb_000280_110 Hb_003556_070--Hb_000280_110 Hb_000977_090 Hb_000977_090 Hb_003556_070--Hb_000977_090 Hb_073119_010--Hb_000098_250 Hb_000819_010 Hb_000819_010 Hb_073119_010--Hb_000819_010 Hb_000094_010 Hb_000094_010 Hb_073119_010--Hb_000094_010 Hb_073119_010--Hb_017604_020 Hb_000003_420 Hb_000003_420 Hb_073119_010--Hb_000003_420 Hb_002410_010 Hb_002410_010 Hb_000098_250--Hb_002410_010 Hb_117127_010 Hb_117127_010 Hb_000098_250--Hb_117127_010 Hb_008667_030 Hb_008667_030 Hb_000098_250--Hb_008667_030 Hb_002529_080 Hb_002529_080 Hb_000098_250--Hb_002529_080 Hb_020648_020 Hb_020648_020 Hb_000098_250--Hb_020648_020 Hb_000771_030 Hb_000771_030 Hb_000098_250--Hb_000771_030 Hb_001699_050 Hb_001699_050 Hb_017604_020--Hb_001699_050 Hb_002276_100 Hb_002276_100 Hb_017604_020--Hb_002276_100 Hb_000808_160 Hb_000808_160 Hb_017604_020--Hb_000808_160 Hb_004544_090 Hb_004544_090 Hb_017604_020--Hb_004544_090 Hb_009510_050 Hb_009510_050 Hb_017604_020--Hb_009510_050 Hb_000836_390 Hb_000836_390 Hb_000120_070--Hb_000836_390 Hb_007765_140 Hb_007765_140 Hb_000120_070--Hb_007765_140 Hb_008215_010 Hb_008215_010 Hb_000120_070--Hb_008215_010 Hb_000075_110 Hb_000075_110 Hb_000120_070--Hb_000075_110 Hb_006970_150 Hb_006970_150 Hb_000120_070--Hb_006970_150 Hb_000280_110--Hb_002276_100 Hb_000280_110--Hb_000819_010 Hb_009803_030 Hb_009803_030 Hb_000280_110--Hb_009803_030 Hb_002600_010 Hb_002600_010 Hb_000280_110--Hb_002600_010 Hb_046101_010 Hb_046101_010 Hb_000280_110--Hb_046101_010 Hb_107543_010 Hb_107543_010 Hb_000280_110--Hb_107543_010 Hb_004007_120 Hb_004007_120 Hb_000977_090--Hb_004007_120 Hb_000977_090--Hb_000120_070 Hb_052764_080 Hb_052764_080 Hb_000977_090--Hb_052764_080 Hb_000977_090--Hb_073119_010 Hb_002324_050 Hb_002324_050 Hb_000977_090--Hb_002324_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.91794 361.382 92.3415 107.498 1.76596 5.02798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.17546 1.0944 3.11476 159.143 37.0832

CAGE analysis