Hb_001699_050

Information

Type transcription factor
Description TF Family: MYB
Location Contig1699: 48736-49487
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11410g
description hypothetical protein
nr
ID XP_006383085.1
description hypothetical protein POPTR_0005s11410g [Populus trichocarpa]
swissprot
ID P81393
description Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1
trembl
ID U5GHF4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s11410g PE=4 SV=1
Gene Ontology
ID GO:0005634
description myb-related protein 308-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001699_050 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0005s11410g [Populus trichocarpa]
2 Hb_017604_020 0.1000356831 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
3 Hb_004032_250 0.1128038971 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000007_160 0.1232148251 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
5 Hb_000808_160 0.1238487424 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
6 Hb_009510_050 0.1240832608 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002324_050 0.1277286814 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
8 Hb_003602_090 0.1293210549 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
9 Hb_023386_050 0.1306968541 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003556_070 0.1365988766 - - metal ion binding protein, putative [Ricinus communis]
11 Hb_082870_010 0.1388479553 - - Disease resistance protein RFL1, putative [Ricinus communis]
12 Hb_000236_120 0.1418918276 - - -
13 Hb_000995_010 0.1422115526 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
14 Hb_001071_060 0.1464372979 - - Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
15 Hb_006002_010 0.1477784323 transcription factor TF Family: MYB Myb domain protein 5 isoform 1 [Theobroma cacao]
16 Hb_006615_180 0.1482268283 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
17 Hb_019040_010 0.1488892146 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
18 Hb_098160_010 0.1492802745 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
19 Hb_004544_090 0.1501319499 - - cytochrome P450, putative [Ricinus communis]
20 Hb_005000_050 0.1530803397 - - PREDICTED: tetraspanin-2 [Jatropha curcas]

Gene co-expression network

sample Hb_001699_050 Hb_001699_050 Hb_017604_020 Hb_017604_020 Hb_001699_050--Hb_017604_020 Hb_004032_250 Hb_004032_250 Hb_001699_050--Hb_004032_250 Hb_000007_160 Hb_000007_160 Hb_001699_050--Hb_000007_160 Hb_000808_160 Hb_000808_160 Hb_001699_050--Hb_000808_160 Hb_009510_050 Hb_009510_050 Hb_001699_050--Hb_009510_050 Hb_002324_050 Hb_002324_050 Hb_001699_050--Hb_002324_050 Hb_002276_100 Hb_002276_100 Hb_017604_020--Hb_002276_100 Hb_017604_020--Hb_000808_160 Hb_003556_070 Hb_003556_070 Hb_017604_020--Hb_003556_070 Hb_004544_090 Hb_004544_090 Hb_017604_020--Hb_004544_090 Hb_017604_020--Hb_009510_050 Hb_004032_250--Hb_002324_050 Hb_002324_040 Hb_002324_040 Hb_004032_250--Hb_002324_040 Hb_064047_010 Hb_064047_010 Hb_004032_250--Hb_064047_010 Hb_004282_040 Hb_004282_040 Hb_004032_250--Hb_004282_040 Hb_010381_110 Hb_010381_110 Hb_004032_250--Hb_010381_110 Hb_001148_040 Hb_001148_040 Hb_000007_160--Hb_001148_040 Hb_001195_500 Hb_001195_500 Hb_000007_160--Hb_001195_500 Hb_002609_150 Hb_002609_150 Hb_000007_160--Hb_002609_150 Hb_008175_030 Hb_008175_030 Hb_000007_160--Hb_008175_030 Hb_000778_020 Hb_000778_020 Hb_000007_160--Hb_000778_020 Hb_002571_010 Hb_002571_010 Hb_000808_160--Hb_002571_010 Hb_000522_130 Hb_000522_130 Hb_000808_160--Hb_000522_130 Hb_000094_010 Hb_000094_010 Hb_000808_160--Hb_000094_010 Hb_000976_340 Hb_000976_340 Hb_000808_160--Hb_000976_340 Hb_003602_090 Hb_003602_090 Hb_009510_050--Hb_003602_090 Hb_006615_180 Hb_006615_180 Hb_009510_050--Hb_006615_180 Hb_082870_010 Hb_082870_010 Hb_009510_050--Hb_082870_010 Hb_117127_010 Hb_117127_010 Hb_009510_050--Hb_117127_010 Hb_000723_060 Hb_000723_060 Hb_009510_050--Hb_000723_060 Hb_003656_170 Hb_003656_170 Hb_002324_050--Hb_003656_170 Hb_002324_050--Hb_002324_040 Hb_003964_010 Hb_003964_010 Hb_002324_050--Hb_003964_010 Hb_003025_150 Hb_003025_150 Hb_002324_050--Hb_003025_150 Hb_001123_170 Hb_001123_170 Hb_002324_050--Hb_001123_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0843813 2.69487 0.735869 1.29208 0.112453 0.100957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0862187 0 0 0.994787 0.399797

CAGE analysis