Hb_000778_020

Information

Type -
Description -
Location Contig778: 72043-73473
Sequence    

Annotation

kegg
ID pop:POPTR_0007s11740g
description POPTRDRAFT_1083288; hypothetical protein
nr
ID XP_012079155.1
description PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
swissprot
ID Q6RYA0
description Salicylic acid-binding protein 2 OS=Nicotiana tabacum GN=SABP2 PE=1 SV=1
trembl
ID B9HEE5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s11740g PE=4 SV=2
Gene Ontology
ID GO:0016787
description salicylic acid-binding protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000778_020 0.0 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
2 Hb_008175_030 0.0696836156 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
3 Hb_057079_020 0.0917741558 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002928_180 0.1094627595 - - catalase CAT1 [Manihot esculenta]
5 Hb_010253_020 0.109512018 - - alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_001408_150 0.1127573906 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
7 Hb_000189_120 0.1155118938 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
8 Hb_002739_060 0.1168627542 - - -
9 Hb_000236_110 0.1197821418 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
10 Hb_005880_010 0.1199352319 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
11 Hb_000007_160 0.1301786519 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
12 Hb_001148_040 0.1307714049 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
13 Hb_000589_220 0.1321449331 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
14 Hb_001071_060 0.132293138 - - Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
15 Hb_001410_010 0.1331891423 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
16 Hb_001369_160 0.1341764382 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
17 Hb_011310_200 0.1391783636 - - grr1, plant, putative [Ricinus communis]
18 Hb_002928_120 0.1410856606 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
19 Hb_000532_130 0.1412365659 - - hypothetical protein [Anabaena sp. PCC 7108]
20 Hb_002660_040 0.142903257 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000778_020 Hb_000778_020 Hb_008175_030 Hb_008175_030 Hb_000778_020--Hb_008175_030 Hb_057079_020 Hb_057079_020 Hb_000778_020--Hb_057079_020 Hb_002928_180 Hb_002928_180 Hb_000778_020--Hb_002928_180 Hb_010253_020 Hb_010253_020 Hb_000778_020--Hb_010253_020 Hb_001408_150 Hb_001408_150 Hb_000778_020--Hb_001408_150 Hb_000189_120 Hb_000189_120 Hb_000778_020--Hb_000189_120 Hb_002739_060 Hb_002739_060 Hb_008175_030--Hb_002739_060 Hb_005880_010 Hb_005880_010 Hb_008175_030--Hb_005880_010 Hb_008175_030--Hb_001408_150 Hb_008175_030--Hb_057079_020 Hb_000532_130 Hb_000532_130 Hb_008175_030--Hb_000532_130 Hb_001410_010 Hb_001410_010 Hb_057079_020--Hb_001410_010 Hb_013749_060 Hb_013749_060 Hb_057079_020--Hb_013749_060 Hb_011310_200 Hb_011310_200 Hb_057079_020--Hb_011310_200 Hb_057079_020--Hb_010253_020 Hb_000429_110 Hb_000429_110 Hb_002928_180--Hb_000429_110 Hb_000236_110 Hb_000236_110 Hb_002928_180--Hb_000236_110 Hb_002928_120 Hb_002928_120 Hb_002928_180--Hb_002928_120 Hb_010174_190 Hb_010174_190 Hb_002928_180--Hb_010174_190 Hb_002928_180--Hb_001410_010 Hb_000083_130 Hb_000083_130 Hb_010253_020--Hb_000083_130 Hb_010253_020--Hb_000189_120 Hb_001071_060 Hb_001071_060 Hb_010253_020--Hb_001071_060 Hb_010253_020--Hb_002928_120 Hb_060909_010 Hb_060909_010 Hb_001408_150--Hb_060909_010 Hb_001408_150--Hb_002739_060 Hb_001408_150--Hb_000532_130 Hb_000197_230 Hb_000197_230 Hb_001408_150--Hb_000197_230 Hb_001584_010 Hb_001584_010 Hb_000189_120--Hb_001584_010 Hb_000189_120--Hb_008175_030 Hb_000189_120--Hb_057079_020 Hb_000007_160 Hb_000007_160 Hb_000189_120--Hb_000007_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.10021 11.9498 2.0342 5.56009 0.704941 1.21808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.394221 0.137816 0.255503 8.40195 2.62848

CAGE analysis