Hb_000189_120

Information

Type transcription factor
Description TF Family: bHLH
Location Contig189: 131993-137395
Sequence    

Annotation

kegg
ID rcu:RCOM_0484610
description hypothetical protein
nr
ID XP_012089262.1
description PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
swissprot
ID O22768
description Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2 SV=2
trembl
ID B9SZ73
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0484610 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor une12-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18652: 137141-137405
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_120 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
2 Hb_001584_010 0.1143203582 - - kelch repeat protein, putative [Ricinus communis]
3 Hb_000778_020 0.1155118938 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
4 Hb_008175_030 0.1294305961 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
5 Hb_010253_020 0.1327565595 - - alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_057079_020 0.1334529195 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000007_160 0.1391864391 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
8 Hb_002928_180 0.1411833701 - - catalase CAT1 [Manihot esculenta]
9 Hb_001148_040 0.1429665368 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
10 Hb_003299_010 0.1433060565 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
11 Hb_000977_010 0.1527013075 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
12 Hb_011310_200 0.1529062462 - - grr1, plant, putative [Ricinus communis]
13 Hb_003894_100 0.1559681113 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
14 Hb_000803_100 0.1566234075 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
15 Hb_000313_370 0.1600408365 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_001195_500 0.16280031 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
17 Hb_002662_090 0.1631682669 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
18 Hb_007618_010 0.1648784828 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
19 Hb_002928_120 0.1657278443 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
20 Hb_165130_010 0.1663361458 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_120 Hb_000189_120 Hb_001584_010 Hb_001584_010 Hb_000189_120--Hb_001584_010 Hb_000778_020 Hb_000778_020 Hb_000189_120--Hb_000778_020 Hb_008175_030 Hb_008175_030 Hb_000189_120--Hb_008175_030 Hb_010253_020 Hb_010253_020 Hb_000189_120--Hb_010253_020 Hb_057079_020 Hb_057079_020 Hb_000189_120--Hb_057079_020 Hb_000007_160 Hb_000007_160 Hb_000189_120--Hb_000007_160 Hb_001584_010--Hb_008175_030 Hb_003299_010 Hb_003299_010 Hb_001584_010--Hb_003299_010 Hb_001584_010--Hb_000778_020 Hb_001584_010--Hb_000007_160 Hb_003525_020 Hb_003525_020 Hb_001584_010--Hb_003525_020 Hb_000778_020--Hb_008175_030 Hb_000778_020--Hb_057079_020 Hb_002928_180 Hb_002928_180 Hb_000778_020--Hb_002928_180 Hb_000778_020--Hb_010253_020 Hb_001408_150 Hb_001408_150 Hb_000778_020--Hb_001408_150 Hb_002739_060 Hb_002739_060 Hb_008175_030--Hb_002739_060 Hb_005880_010 Hb_005880_010 Hb_008175_030--Hb_005880_010 Hb_008175_030--Hb_001408_150 Hb_008175_030--Hb_057079_020 Hb_000532_130 Hb_000532_130 Hb_008175_030--Hb_000532_130 Hb_000083_130 Hb_000083_130 Hb_010253_020--Hb_000083_130 Hb_010253_020--Hb_057079_020 Hb_001071_060 Hb_001071_060 Hb_010253_020--Hb_001071_060 Hb_002928_120 Hb_002928_120 Hb_010253_020--Hb_002928_120 Hb_001410_010 Hb_001410_010 Hb_057079_020--Hb_001410_010 Hb_013749_060 Hb_013749_060 Hb_057079_020--Hb_013749_060 Hb_011310_200 Hb_011310_200 Hb_057079_020--Hb_011310_200 Hb_001148_040 Hb_001148_040 Hb_000007_160--Hb_001148_040 Hb_001699_050 Hb_001699_050 Hb_000007_160--Hb_001699_050 Hb_001195_500 Hb_001195_500 Hb_000007_160--Hb_001195_500 Hb_002609_150 Hb_002609_150 Hb_000007_160--Hb_002609_150 Hb_000007_160--Hb_008175_030 Hb_000007_160--Hb_000778_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.48512 36.2761 3.74522 14.9694 4.65489 2.92835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.37893 1.06521 0.410372 27.9418 3.74096

CAGE analysis