Hb_011310_200

Information

Type -
Description -
Location Contig11310: 113375-117265
Sequence    

Annotation

kegg
ID rcu:RCOM_0924020
description grr1, plant, putative
nr
ID XP_002515516.1
description grr1, plant, putative [Ricinus communis]
swissprot
ID Q9SKK0
description EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1
trembl
ID B9RP47
description Grr1, plant, putative OS=Ricinus communis GN=RCOM_0924020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03926: 113232-117261
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011310_200 0.0 - - grr1, plant, putative [Ricinus communis]
2 Hb_001251_060 0.1170048758 - - aldo/keto reductase AKR [Manihot esculenta]
3 Hb_057079_020 0.1182671243 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001410_010 0.1215470411 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
5 Hb_000866_370 0.1217107014 - - synaptotagmin, putative [Ricinus communis]
6 Hb_000216_020 0.1237658225 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
7 Hb_001544_080 0.1373577851 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
8 Hb_008226_100 0.1382547246 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
9 Hb_002928_180 0.1388442715 - - catalase CAT1 [Manihot esculenta]
10 Hb_000778_020 0.1391783636 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
11 Hb_000679_210 0.1420168867 - - grr1, plant, putative [Ricinus communis]
12 Hb_117895_010 0.1438276014 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
13 Hb_000059_130 0.1453997524 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
14 Hb_000022_180 0.1472616283 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
15 Hb_000313_370 0.1472716362 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_008175_030 0.1501254704 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
17 Hb_001408_150 0.1515972392 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
18 Hb_004648_100 0.1521978341 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
19 Hb_000189_120 0.1529062462 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
20 Hb_000645_240 0.1543846954 - - AMP dependent ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_011310_200 Hb_011310_200 Hb_001251_060 Hb_001251_060 Hb_011310_200--Hb_001251_060 Hb_057079_020 Hb_057079_020 Hb_011310_200--Hb_057079_020 Hb_001410_010 Hb_001410_010 Hb_011310_200--Hb_001410_010 Hb_000866_370 Hb_000866_370 Hb_011310_200--Hb_000866_370 Hb_000216_020 Hb_000216_020 Hb_011310_200--Hb_000216_020 Hb_001544_080 Hb_001544_080 Hb_011310_200--Hb_001544_080 Hb_002471_140 Hb_002471_140 Hb_001251_060--Hb_002471_140 Hb_001251_060--Hb_000216_020 Hb_000866_090 Hb_000866_090 Hb_001251_060--Hb_000866_090 Hb_000059_130 Hb_000059_130 Hb_001251_060--Hb_000059_130 Hb_001414_040 Hb_001414_040 Hb_001251_060--Hb_001414_040 Hb_000778_020 Hb_000778_020 Hb_057079_020--Hb_000778_020 Hb_057079_020--Hb_001410_010 Hb_013749_060 Hb_013749_060 Hb_057079_020--Hb_013749_060 Hb_008175_030 Hb_008175_030 Hb_057079_020--Hb_008175_030 Hb_010253_020 Hb_010253_020 Hb_057079_020--Hb_010253_020 Hb_002218_070 Hb_002218_070 Hb_001410_010--Hb_002218_070 Hb_000236_110 Hb_000236_110 Hb_001410_010--Hb_000236_110 Hb_002928_180 Hb_002928_180 Hb_001410_010--Hb_002928_180 Hb_036568_010 Hb_036568_010 Hb_001410_010--Hb_036568_010 Hb_117895_010 Hb_117895_010 Hb_000866_370--Hb_117895_010 Hb_000010_350 Hb_000010_350 Hb_000866_370--Hb_000010_350 Hb_089100_040 Hb_089100_040 Hb_000866_370--Hb_089100_040 Hb_002233_020 Hb_002233_020 Hb_000866_370--Hb_002233_020 Hb_000645_240 Hb_000645_240 Hb_000866_370--Hb_000645_240 Hb_000216_020--Hb_000059_130 Hb_003506_020 Hb_003506_020 Hb_000216_020--Hb_003506_020 Hb_000371_060 Hb_000371_060 Hb_000216_020--Hb_000371_060 Hb_000270_230 Hb_000270_230 Hb_000216_020--Hb_000270_230 Hb_008667_060 Hb_008667_060 Hb_000216_020--Hb_008667_060 Hb_000069_780 Hb_000069_780 Hb_000216_020--Hb_000069_780 Hb_001544_080--Hb_117895_010 Hb_011716_110 Hb_011716_110 Hb_001544_080--Hb_011716_110 Hb_001544_080--Hb_000866_370 Hb_009897_010 Hb_009897_010 Hb_001544_080--Hb_009897_010 Hb_029977_050 Hb_029977_050 Hb_001544_080--Hb_029977_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3985 204.502 22.9585 77.9135 27.822 23.3047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.55275 6.65986 25.7764 122.445 43.5958

CAGE analysis