Hb_001251_060

Information

Type -
Description -
Location Contig1251: 79072-82435
Sequence    

Annotation

kegg
ID rcu:RCOM_1304680
description aldo/keto reductase, putative (EC:1.1.1.65)
nr
ID AAX84672.1
description aldo/keto reductase AKR [Manihot esculenta]
swissprot
ID O22707
description Probable aldo-keto reductase 3 OS=Arabidopsis thaliana GN=At1g60690 PE=3 SV=1
trembl
ID V4RR30
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028770mg PE=4 SV=1
Gene Ontology
ID GO:0050236
description probable aldo-keto reductase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07688: 79130-82373 , PASA_asmbl_07689: 79130-81084
cDNA
(Sanger)
(ID:Location)		 039_K22.ab1: 79130-80606

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001251_060 0.0 - - aldo/keto reductase AKR [Manihot esculenta]
2 Hb_002471_140 0.1139848575 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
3 Hb_011310_200 0.1170048758 - - grr1, plant, putative [Ricinus communis]
4 Hb_000216_020 0.1280843479 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
5 Hb_000866_090 0.1296253558 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
6 Hb_000059_130 0.13062119 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
7 Hb_001414_040 0.1349992955 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
8 Hb_000371_060 0.1376512582 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
9 Hb_148682_010 0.1466022752 - - PREDICTED: uncharacterized protein LOC105630720 [Jatropha curcas]
10 Hb_000133_090 0.1467837015 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
11 Hb_000866_370 0.1503222452 - - synaptotagmin, putative [Ricinus communis]
12 Hb_001561_010 0.150787571 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
13 Hb_000345_340 0.1513004001 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
14 Hb_000270_110 0.153106537 - - PREDICTED: calcium-dependent protein kinase 10 [Jatropha curcas]
15 Hb_001699_150 0.1543471594 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
16 Hb_001288_070 0.1548797087 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
17 Hb_001799_190 0.1555276219 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
18 Hb_000313_370 0.1568791525 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_011861_080 0.1568939727 - - hypothetical protein JCGZ_06088 [Jatropha curcas]
20 Hb_000645_240 0.1571209606 - - AMP dependent ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001251_060 Hb_001251_060 Hb_002471_140 Hb_002471_140 Hb_001251_060--Hb_002471_140 Hb_011310_200 Hb_011310_200 Hb_001251_060--Hb_011310_200 Hb_000216_020 Hb_000216_020 Hb_001251_060--Hb_000216_020 Hb_000866_090 Hb_000866_090 Hb_001251_060--Hb_000866_090 Hb_000059_130 Hb_000059_130 Hb_001251_060--Hb_000059_130 Hb_001414_040 Hb_001414_040 Hb_001251_060--Hb_001414_040 Hb_000345_340 Hb_000345_340 Hb_002471_140--Hb_000345_340 Hb_008667_060 Hb_008667_060 Hb_002471_140--Hb_008667_060 Hb_002471_140--Hb_000059_130 Hb_002471_140--Hb_000866_090 Hb_002477_120 Hb_002477_120 Hb_002471_140--Hb_002477_120 Hb_057079_020 Hb_057079_020 Hb_011310_200--Hb_057079_020 Hb_001410_010 Hb_001410_010 Hb_011310_200--Hb_001410_010 Hb_000866_370 Hb_000866_370 Hb_011310_200--Hb_000866_370 Hb_011310_200--Hb_000216_020 Hb_001544_080 Hb_001544_080 Hb_011310_200--Hb_001544_080 Hb_000216_020--Hb_000059_130 Hb_003506_020 Hb_003506_020 Hb_000216_020--Hb_003506_020 Hb_000371_060 Hb_000371_060 Hb_000216_020--Hb_000371_060 Hb_000270_230 Hb_000270_230 Hb_000216_020--Hb_000270_230 Hb_000216_020--Hb_008667_060 Hb_000069_780 Hb_000069_780 Hb_000216_020--Hb_000069_780 Hb_000645_240 Hb_000645_240 Hb_000866_090--Hb_000645_240 Hb_001080_140 Hb_001080_140 Hb_000866_090--Hb_001080_140 Hb_000866_090--Hb_008667_060 Hb_000802_190 Hb_000802_190 Hb_000866_090--Hb_000802_190 Hb_001699_150 Hb_001699_150 Hb_000866_090--Hb_001699_150 Hb_000059_130--Hb_008667_060 Hb_000473_150 Hb_000473_150 Hb_000059_130--Hb_000473_150 Hb_000805_190 Hb_000805_190 Hb_000059_130--Hb_000805_190 Hb_000059_130--Hb_000069_780 Hb_000059_130--Hb_000371_060 Hb_006907_140 Hb_006907_140 Hb_001414_040--Hb_006907_140 Hb_001414_040--Hb_000371_060 Hb_007765_030 Hb_007765_030 Hb_001414_040--Hb_007765_030 Hb_000009_120 Hb_000009_120 Hb_001414_040--Hb_000009_120 Hb_001341_160 Hb_001341_160 Hb_001414_040--Hb_001341_160 Hb_001259_120 Hb_001259_120 Hb_001414_040--Hb_001259_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6949 106.338 29.355 39.9732 19.2509 14.1951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.1381 6.29891 20.5046 74.2347 20.9566

CAGE analysis