Hb_007765_030

Information

Type -
Description -
Location Contig7765: 21644-27949
Sequence    

Annotation

kegg
ID rcu:RCOM_0731110
description ceramidase, putative
nr
ID XP_012068443.1
description PREDICTED: neutral ceramidase [Jatropha curcas]
swissprot
ID Q304B9
description Neutral ceramidase OS=Arabidopsis thaliana GN=At2g38010 PE=3 SV=1
trembl
ID A0A067LGU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57822: 21776-27707 , PASA_asmbl_57823: 26829-27132
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007765_030 0.0 - - PREDICTED: neutral ceramidase [Jatropha curcas]
2 Hb_002217_220 0.0793892006 - - hypothetical protein POPTR_0010s15930g [Populus trichocarpa]
3 Hb_000260_660 0.0804209503 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001414_040 0.0814538002 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
5 Hb_001341_160 0.0829108853 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
6 Hb_000220_120 0.0890435285 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
7 Hb_000834_230 0.091442995 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
8 Hb_003849_240 0.0925855815 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
9 Hb_001031_090 0.0930248914 - - PREDICTED: translational activator GCN1 [Jatropha curcas]
10 Hb_008948_140 0.0962428782 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
11 Hb_000049_250 0.0967598574 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
12 Hb_000010_420 0.098660847 - - Callose synthase 10 [Morus notabilis]
13 Hb_000009_120 0.0993097078 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
14 Hb_001322_180 0.0993468602 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
15 Hb_001167_050 0.1006077253 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
16 Hb_002524_020 0.1019964138 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
17 Hb_062416_010 0.1024508811 - - PREDICTED: UPF0202 protein At1g10490 [Jatropha curcas]
18 Hb_000395_220 0.1027579341 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
19 Hb_000080_110 0.1029542989 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
20 Hb_004109_380 0.1034376513 - - PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_007765_030 Hb_007765_030 Hb_002217_220 Hb_002217_220 Hb_007765_030--Hb_002217_220 Hb_000260_660 Hb_000260_660 Hb_007765_030--Hb_000260_660 Hb_001414_040 Hb_001414_040 Hb_007765_030--Hb_001414_040 Hb_001341_160 Hb_001341_160 Hb_007765_030--Hb_001341_160 Hb_000220_120 Hb_000220_120 Hb_007765_030--Hb_000220_120 Hb_000834_230 Hb_000834_230 Hb_007765_030--Hb_000834_230 Hb_002217_220--Hb_000260_660 Hb_011287_010 Hb_011287_010 Hb_002217_220--Hb_011287_010 Hb_000395_220 Hb_000395_220 Hb_002217_220--Hb_000395_220 Hb_083799_010 Hb_083799_010 Hb_002217_220--Hb_083799_010 Hb_007426_140 Hb_007426_140 Hb_002217_220--Hb_007426_140 Hb_000260_660--Hb_083799_010 Hb_009615_160 Hb_009615_160 Hb_000260_660--Hb_009615_160 Hb_005074_020 Hb_005074_020 Hb_000260_660--Hb_005074_020 Hb_006006_040 Hb_006006_040 Hb_000260_660--Hb_006006_040 Hb_006907_140 Hb_006907_140 Hb_001414_040--Hb_006907_140 Hb_000371_060 Hb_000371_060 Hb_001414_040--Hb_000371_060 Hb_000009_120 Hb_000009_120 Hb_001414_040--Hb_000009_120 Hb_001414_040--Hb_001341_160 Hb_001259_120 Hb_001259_120 Hb_001414_040--Hb_001259_120 Hb_003604_050 Hb_003604_050 Hb_001341_160--Hb_003604_050 Hb_000172_340 Hb_000172_340 Hb_001341_160--Hb_000172_340 Hb_000010_420 Hb_000010_420 Hb_001341_160--Hb_000010_420 Hb_001904_030 Hb_001904_030 Hb_001341_160--Hb_001904_030 Hb_004223_160 Hb_004223_160 Hb_001341_160--Hb_004223_160 Hb_008948_140 Hb_008948_140 Hb_001341_160--Hb_008948_140 Hb_000200_110 Hb_000200_110 Hb_000220_120--Hb_000200_110 Hb_000049_250 Hb_000049_250 Hb_000220_120--Hb_000049_250 Hb_000787_200 Hb_000787_200 Hb_000220_120--Hb_000787_200 Hb_001477_020 Hb_001477_020 Hb_000220_120--Hb_001477_020 Hb_000428_030 Hb_000428_030 Hb_000220_120--Hb_000428_030 Hb_000318_150 Hb_000318_150 Hb_000220_120--Hb_000318_150 Hb_000834_230--Hb_000787_200 Hb_080147_050 Hb_080147_050 Hb_000834_230--Hb_080147_050 Hb_000321_090 Hb_000321_090 Hb_000834_230--Hb_000321_090 Hb_000834_230--Hb_000049_250 Hb_000834_230--Hb_000220_120 Hb_001322_180 Hb_001322_180 Hb_000834_230--Hb_001322_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.31465 22.5677 11.2705 12.2559 6.97875 7.76271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.15357 5.15704 4.67333 22.2189 8.79845

CAGE analysis