Hb_011287_010

Information

Type -
Description -
Location Contig11287: 16428-21267
Sequence    

Annotation

kegg
ID rcu:RCOM_1080870
description ubiquitin-protein ligase, putative
nr
ID XP_002514944.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID O48700
description U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2
trembl
ID B9RMH5
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1080870 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03885: 17484-17885 , PASA_asmbl_03886: 19598-21353
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011287_010 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_002217_220 0.081337699 - - hypothetical protein POPTR_0010s15930g [Populus trichocarpa]
3 Hb_000395_220 0.0918729247 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
4 Hb_000227_040 0.0933439812 - - Stem-specific protein TSJT1, putative [Ricinus communis]
5 Hb_000260_660 0.0933654123 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001642_070 0.1015876147 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
7 Hb_012760_040 0.1039093105 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
8 Hb_075315_010 0.1068283323 - - ornithine aminotransferase [Camellia sinensis]
9 Hb_083799_010 0.108557648 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_001780_150 0.1091176865 - - ceramidase, putative [Ricinus communis]
11 Hb_143629_100 0.1096753898 - - PREDICTED: phytochrome A [Jatropha curcas]
12 Hb_005081_020 0.1098960709 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
13 Hb_002027_190 0.1130102622 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
14 Hb_002851_010 0.1147571247 - - sugar transporter, putative [Ricinus communis]
15 Hb_000120_230 0.1165538868 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Jatropha curcas]
16 Hb_020805_180 0.1190359841 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
17 Hb_042474_010 0.1191201638 - - PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Jatropha curcas]
18 Hb_007426_140 0.1194459367 - - ornithine aminotransferase, putative [Ricinus communis]
19 Hb_000327_250 0.1205773102 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
20 Hb_000144_120 0.1209659068 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011287_010 Hb_011287_010 Hb_002217_220 Hb_002217_220 Hb_011287_010--Hb_002217_220 Hb_000395_220 Hb_000395_220 Hb_011287_010--Hb_000395_220 Hb_000227_040 Hb_000227_040 Hb_011287_010--Hb_000227_040 Hb_000260_660 Hb_000260_660 Hb_011287_010--Hb_000260_660 Hb_001642_070 Hb_001642_070 Hb_011287_010--Hb_001642_070 Hb_012760_040 Hb_012760_040 Hb_011287_010--Hb_012760_040 Hb_002217_220--Hb_000260_660 Hb_007765_030 Hb_007765_030 Hb_002217_220--Hb_007765_030 Hb_002217_220--Hb_000395_220 Hb_083799_010 Hb_083799_010 Hb_002217_220--Hb_083799_010 Hb_007426_140 Hb_007426_140 Hb_002217_220--Hb_007426_140 Hb_000395_220--Hb_007426_140 Hb_000395_220--Hb_083799_010 Hb_009732_020 Hb_009732_020 Hb_000395_220--Hb_009732_020 Hb_001780_150 Hb_001780_150 Hb_000395_220--Hb_001780_150 Hb_002272_170 Hb_002272_170 Hb_000395_220--Hb_002272_170 Hb_000227_040--Hb_009732_020 Hb_012545_090 Hb_012545_090 Hb_000227_040--Hb_012545_090 Hb_000227_040--Hb_000395_220 Hb_000227_040--Hb_001780_150 Hb_000227_040--Hb_012760_040 Hb_000260_660--Hb_007765_030 Hb_000260_660--Hb_083799_010 Hb_009615_160 Hb_009615_160 Hb_000260_660--Hb_009615_160 Hb_005074_020 Hb_005074_020 Hb_000260_660--Hb_005074_020 Hb_006006_040 Hb_006006_040 Hb_000260_660--Hb_006006_040 Hb_004450_070 Hb_004450_070 Hb_001642_070--Hb_004450_070 Hb_016347_010 Hb_016347_010 Hb_001642_070--Hb_016347_010 Hb_000327_250 Hb_000327_250 Hb_001642_070--Hb_000327_250 Hb_019280_010 Hb_019280_010 Hb_001642_070--Hb_019280_010 Hb_000363_040 Hb_000363_040 Hb_001642_070--Hb_000363_040 Hb_000209_100 Hb_000209_100 Hb_001642_070--Hb_000209_100 Hb_042474_010 Hb_042474_010 Hb_012760_040--Hb_042474_010 Hb_000144_120 Hb_000144_120 Hb_012760_040--Hb_000144_120 Hb_000190_090 Hb_000190_090 Hb_012760_040--Hb_000190_090 Hb_008226_070 Hb_008226_070 Hb_012760_040--Hb_008226_070 Hb_006916_110 Hb_006916_110 Hb_012760_040--Hb_006916_110 Hb_082741_010 Hb_082741_010 Hb_012760_040--Hb_082741_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.34318 7.46919 3.22119 8.16573 2.78794 3.45658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.7513 3.26527 3.55756 14.2529 4.28485

CAGE analysis