Hb_001780_150

Information

Type -
Description -
Location Contig1780: 134855-136309
Sequence    

Annotation

kegg
ID rcu:RCOM_0731110
description ceramidase, putative
nr
ID XP_002520446.1
description ceramidase, putative [Ricinus communis]
swissprot
ID Q304B9
description Neutral ceramidase OS=Arabidopsis thaliana GN=At2g38010 PE=3 SV=1
trembl
ID B9S377
description Ceramidase, putative OS=Ricinus communis GN=RCOM_0731110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17126: 134935-135143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001780_150 0.0 - - ceramidase, putative [Ricinus communis]
2 Hb_000395_220 0.0885657633 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
3 Hb_011287_010 0.1091176865 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_075315_010 0.1114881492 - - ornithine aminotransferase [Camellia sinensis]
5 Hb_007426_140 0.1115719919 - - ornithine aminotransferase, putative [Ricinus communis]
6 Hb_002851_010 0.1139031558 - - sugar transporter, putative [Ricinus communis]
7 Hb_000227_040 0.1142253926 - - Stem-specific protein TSJT1, putative [Ricinus communis]
8 Hb_002213_090 0.1142676024 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
9 Hb_001322_180 0.1181114005 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
10 Hb_000702_060 0.1188615572 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000692_160 0.1233501131 - - Transportin 1 isoform 1 [Theobroma cacao]
12 Hb_135959_010 0.1240071363 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
13 Hb_000362_110 0.1260032017 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
14 Hb_003906_170 0.1268606745 - - alcohol dehydrogenase, putative [Ricinus communis]
15 Hb_069619_010 0.127817887 - - Aspartic proteinase precursor, putative [Ricinus communis]
16 Hb_005081_020 0.1284162962 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
17 Hb_009732_020 0.1289682809 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
18 Hb_003626_050 0.1299671231 - - malic enzyme, putative [Ricinus communis]
19 Hb_083799_010 0.1300924596 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_000157_070 0.1311703298 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]

Gene co-expression network

sample Hb_001780_150 Hb_001780_150 Hb_000395_220 Hb_000395_220 Hb_001780_150--Hb_000395_220 Hb_011287_010 Hb_011287_010 Hb_001780_150--Hb_011287_010 Hb_075315_010 Hb_075315_010 Hb_001780_150--Hb_075315_010 Hb_007426_140 Hb_007426_140 Hb_001780_150--Hb_007426_140 Hb_002851_010 Hb_002851_010 Hb_001780_150--Hb_002851_010 Hb_000227_040 Hb_000227_040 Hb_001780_150--Hb_000227_040 Hb_000395_220--Hb_007426_140 Hb_083799_010 Hb_083799_010 Hb_000395_220--Hb_083799_010 Hb_009732_020 Hb_009732_020 Hb_000395_220--Hb_009732_020 Hb_002272_170 Hb_002272_170 Hb_000395_220--Hb_002272_170 Hb_000395_220--Hb_011287_010 Hb_002217_220 Hb_002217_220 Hb_011287_010--Hb_002217_220 Hb_011287_010--Hb_000227_040 Hb_000260_660 Hb_000260_660 Hb_011287_010--Hb_000260_660 Hb_001642_070 Hb_001642_070 Hb_011287_010--Hb_001642_070 Hb_012760_040 Hb_012760_040 Hb_011287_010--Hb_012760_040 Hb_075315_010--Hb_083799_010 Hb_005081_020 Hb_005081_020 Hb_075315_010--Hb_005081_020 Hb_039946_050 Hb_039946_050 Hb_075315_010--Hb_039946_050 Hb_004450_070 Hb_004450_070 Hb_075315_010--Hb_004450_070 Hb_007747_170 Hb_007747_170 Hb_075315_010--Hb_007747_170 Hb_001105_160 Hb_001105_160 Hb_075315_010--Hb_001105_160 Hb_007426_140--Hb_083799_010 Hb_002836_100 Hb_002836_100 Hb_007426_140--Hb_002836_100 Hb_006829_100 Hb_006829_100 Hb_007426_140--Hb_006829_100 Hb_007426_140--Hb_075315_010 Hb_003849_240 Hb_003849_240 Hb_007426_140--Hb_003849_240 Hb_135959_010 Hb_135959_010 Hb_002851_010--Hb_135959_010 Hb_002027_190 Hb_002027_190 Hb_002851_010--Hb_002027_190 Hb_020805_180 Hb_020805_180 Hb_002851_010--Hb_020805_180 Hb_000157_070 Hb_000157_070 Hb_002851_010--Hb_000157_070 Hb_000649_060 Hb_000649_060 Hb_002851_010--Hb_000649_060 Hb_003058_200 Hb_003058_200 Hb_002851_010--Hb_003058_200 Hb_000227_040--Hb_009732_020 Hb_012545_090 Hb_012545_090 Hb_000227_040--Hb_012545_090 Hb_000227_040--Hb_000395_220 Hb_000227_040--Hb_012760_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0961 8.51793 3.23644 9.14914 3.7354 6.0512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.85561 2.03556 2.27535 20.1356 5.20529

CAGE analysis