Hb_029977_050

Information

Type transcription factor
Description TF Family: bZIP
Location Contig29977: 63525-71231
Sequence    

Annotation

kegg
ID pop:POPTR_0009s16590g
description POPTRDRAFT_1085955; bZIP family transcription factor family protein
nr
ID XP_012077857.1
description PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
swissprot
ID O24160
description TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1
trembl
ID A0A067KMV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13576 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor tga2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31327: 63581-65921 , PASA_asmbl_31328: 68350-68489
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029977_050 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
2 Hb_001278_040 0.1440304093 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
3 Hb_001544_080 0.1651123348 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
4 Hb_080451_010 0.1780267925 - - PREDICTED: ankyrin repeat-containing protein At2g01680 [Jatropha curcas]
5 Hb_000120_970 0.1780669207 - - PREDICTED: probable acyl-activating enzyme 2 isoform X2 [Jatropha curcas]
6 Hb_003371_230 0.1788657983 - - lactase-like b precursor [Scleropages formosus]
7 Hb_000787_190 0.1792495766 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 15-like [Jatropha curcas]
8 Hb_011716_110 0.1799121638 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
9 Hb_000107_560 0.1861013926 - - glutamate receptor 3 plant, putative [Ricinus communis]
10 Hb_034337_010 0.1870396283 - - vesicle-associated membrane protein, putative [Ricinus communis]
11 Hb_007785_010 0.1930437604 - - glutathione peroxidase, putative [Ricinus communis]
12 Hb_001351_040 0.1961223803 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
13 Hb_000261_190 0.1970651404 - - PREDICTED: uncharacterized protein At4g04980-like [Jatropha curcas]
14 Hb_000413_230 0.2015067295 - - thioredoxin h [Hevea brasiliensis]
15 Hb_002739_150 0.2019252601 - - Uncharacterized protein TCM_016791 [Theobroma cacao]
16 Hb_003107_020 0.2041725585 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
17 Hb_003155_020 0.2075873437 - - Rpp4C3 [Medicago truncatula]
18 Hb_026337_010 0.2100455192 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10002052mg [Citrus clementina]
19 Hb_000022_180 0.2133960097 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
20 Hb_117895_010 0.2134624665 - - hypothetical protein JCGZ_17178 [Jatropha curcas]

Gene co-expression network

sample Hb_029977_050 Hb_029977_050 Hb_001278_040 Hb_001278_040 Hb_029977_050--Hb_001278_040 Hb_001544_080 Hb_001544_080 Hb_029977_050--Hb_001544_080 Hb_080451_010 Hb_080451_010 Hb_029977_050--Hb_080451_010 Hb_000120_970 Hb_000120_970 Hb_029977_050--Hb_000120_970 Hb_003371_230 Hb_003371_230 Hb_029977_050--Hb_003371_230 Hb_000787_190 Hb_000787_190 Hb_029977_050--Hb_000787_190 Hb_001278_040--Hb_080451_010 Hb_000457_140 Hb_000457_140 Hb_001278_040--Hb_000457_140 Hb_004162_120 Hb_004162_120 Hb_001278_040--Hb_004162_120 Hb_011716_110 Hb_011716_110 Hb_001278_040--Hb_011716_110 Hb_001278_040--Hb_003371_230 Hb_117895_010 Hb_117895_010 Hb_001544_080--Hb_117895_010 Hb_001544_080--Hb_011716_110 Hb_011310_200 Hb_011310_200 Hb_001544_080--Hb_011310_200 Hb_000866_370 Hb_000866_370 Hb_001544_080--Hb_000866_370 Hb_009897_010 Hb_009897_010 Hb_001544_080--Hb_009897_010 Hb_080451_010--Hb_004162_120 Hb_012239_030 Hb_012239_030 Hb_080451_010--Hb_012239_030 Hb_000107_560 Hb_000107_560 Hb_080451_010--Hb_000107_560 Hb_065500_030 Hb_065500_030 Hb_080451_010--Hb_065500_030 Hb_000979_240 Hb_000979_240 Hb_080451_010--Hb_000979_240 Hb_001205_110 Hb_001205_110 Hb_080451_010--Hb_001205_110 Hb_000120_970--Hb_000107_560 Hb_000120_970--Hb_080451_010 Hb_000521_170 Hb_000521_170 Hb_000120_970--Hb_000521_170 Hb_011828_030 Hb_011828_030 Hb_000120_970--Hb_011828_030 Hb_020178_060 Hb_020178_060 Hb_000120_970--Hb_020178_060 Hb_089100_040 Hb_089100_040 Hb_000120_970--Hb_089100_040 Hb_002693_060 Hb_002693_060 Hb_003371_230--Hb_002693_060 Hb_027760_070 Hb_027760_070 Hb_003371_230--Hb_027760_070 Hb_003211_010 Hb_003211_010 Hb_003371_230--Hb_003211_010 Hb_003371_230--Hb_000457_140 Hb_001481_160 Hb_001481_160 Hb_003371_230--Hb_001481_160 Hb_000022_180 Hb_000022_180 Hb_000787_190--Hb_000022_180 Hb_005203_020 Hb_005203_020 Hb_000787_190--Hb_005203_020 Hb_004108_170 Hb_004108_170 Hb_000787_190--Hb_004108_170 Hb_000123_330 Hb_000123_330 Hb_000787_190--Hb_000123_330 Hb_003155_020 Hb_003155_020 Hb_000787_190--Hb_003155_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.10303 6.58633 0.035912 4.35474 1.75354 2.86506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.647208 0.377835 0.468131 4.03641 0.62616

CAGE analysis