Hb_003211_010

Information

Type -
Description -
Location Contig3211: 5198-9464
Sequence    

Annotation

kegg
ID rcu:RCOM_1068440
description hypothetical protein
nr
ID XP_012074179.1
description PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LMV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06666 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33962: 6012-6156 , PASA_asmbl_33963: 6278-6739 , PASA_asmbl_33964: 7592-8021
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003211_010 0.0 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
2 Hb_001055_030 0.0993941129 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
3 Hb_167234_010 0.1042349052 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
4 Hb_011716_090 0.1080237876 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
5 Hb_008143_070 0.1085503065 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
6 Hb_000856_180 0.1148451488 - - calcium-dependent protein kinase [Hevea brasiliensis]
7 Hb_006588_150 0.1209935637 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
8 Hb_032808_030 0.1234384728 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
9 Hb_000009_330 0.1255636466 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
10 Hb_002693_060 0.1263487013 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
11 Hb_030736_070 0.126955104 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
12 Hb_002876_290 0.1286819387 - - PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
13 Hb_000530_010 0.1335527258 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Jatropha curcas]
14 Hb_156850_070 0.1339295157 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002662_020 0.1343540317 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
16 Hb_007894_130 0.1359814506 - - hypothetical protein RCOM_0584960 [Ricinus communis]
17 Hb_000213_120 0.1379220609 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_027760_070 0.1383784193 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
19 Hb_000740_110 0.1385420904 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01850 [Jatropha curcas]
20 Hb_000457_140 0.1388793918 - - PREDICTED: transmembrane protein 136-like [Jatropha curcas]

Gene co-expression network

sample Hb_003211_010 Hb_003211_010 Hb_001055_030 Hb_001055_030 Hb_003211_010--Hb_001055_030 Hb_167234_010 Hb_167234_010 Hb_003211_010--Hb_167234_010 Hb_011716_090 Hb_011716_090 Hb_003211_010--Hb_011716_090 Hb_008143_070 Hb_008143_070 Hb_003211_010--Hb_008143_070 Hb_000856_180 Hb_000856_180 Hb_003211_010--Hb_000856_180 Hb_006588_150 Hb_006588_150 Hb_003211_010--Hb_006588_150 Hb_007894_130 Hb_007894_130 Hb_001055_030--Hb_007894_130 Hb_000236_410 Hb_000236_410 Hb_001055_030--Hb_000236_410 Hb_093084_070 Hb_093084_070 Hb_001055_030--Hb_093084_070 Hb_001055_030--Hb_008143_070 Hb_000009_330 Hb_000009_330 Hb_001055_030--Hb_000009_330 Hb_000622_250 Hb_000622_250 Hb_001055_030--Hb_000622_250 Hb_118026_010 Hb_118026_010 Hb_167234_010--Hb_118026_010 Hb_030736_070 Hb_030736_070 Hb_167234_010--Hb_030736_070 Hb_056987_010 Hb_056987_010 Hb_167234_010--Hb_056987_010 Hb_004586_280 Hb_004586_280 Hb_167234_010--Hb_004586_280 Hb_167234_010--Hb_001055_030 Hb_089140_030 Hb_089140_030 Hb_011716_090--Hb_089140_030 Hb_000200_280 Hb_000200_280 Hb_011716_090--Hb_000200_280 Hb_002693_060 Hb_002693_060 Hb_011716_090--Hb_002693_060 Hb_000640_130 Hb_000640_130 Hb_011716_090--Hb_000640_130 Hb_002827_020 Hb_002827_020 Hb_011716_090--Hb_002827_020 Hb_008143_070--Hb_000622_250 Hb_005143_030 Hb_005143_030 Hb_008143_070--Hb_005143_030 Hb_003498_120 Hb_003498_120 Hb_008143_070--Hb_003498_120 Hb_001318_020 Hb_001318_020 Hb_008143_070--Hb_001318_020 Hb_004668_060 Hb_004668_060 Hb_008143_070--Hb_004668_060 Hb_003071_020 Hb_003071_020 Hb_000856_180--Hb_003071_020 Hb_032808_030 Hb_032808_030 Hb_000856_180--Hb_032808_030 Hb_002046_020 Hb_002046_020 Hb_000856_180--Hb_002046_020 Hb_000905_170 Hb_000905_170 Hb_000856_180--Hb_000905_170 Hb_000856_180--Hb_000236_410 Hb_000856_180--Hb_000009_330 Hb_000740_110 Hb_000740_110 Hb_006588_150--Hb_000740_110 Hb_002876_290 Hb_002876_290 Hb_006588_150--Hb_002876_290 Hb_001369_440 Hb_001369_440 Hb_006588_150--Hb_001369_440 Hb_022400_010 Hb_022400_010 Hb_006588_150--Hb_022400_010 Hb_005214_090 Hb_005214_090 Hb_006588_150--Hb_005214_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.22374 7.74925 1.48585 5.51639 3.97438 5.39982
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.07169 2.62591 1.98823 6.14106 0.601647

CAGE analysis