Hb_167234_010

Information

Type -
Description -
Location Contig167234: 3-551
Sequence    

Annotation

kegg
ID rcu:RCOM_0864940
description DNA binding protein, putative
nr
ID XP_012088030.1
description PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
swissprot
ID Q9FIR1
description AT-hook motif nuclear-localized protein 8 OS=Arabidopsis thaliana GN=AHL8 PE=2 SV=1
trembl
ID A0A067JNN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26547 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_167234_010 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
2 Hb_003211_010 0.1042349052 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
3 Hb_118026_010 0.1114629153 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
4 Hb_030736_070 0.1156431558 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
5 Hb_056987_010 0.1222408457 - - DNA-damage-repair/toleration protein DRT111, chloroplastic [Glycine soja]
6 Hb_004586_280 0.1237148853 - - PREDICTED: GEM-like protein 1 [Jatropha curcas]
7 Hb_001055_030 0.1244760255 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
8 Hb_003640_020 0.1279847397 - - pelota, putative [Ricinus communis]
9 Hb_007894_130 0.1280283734 - - hypothetical protein RCOM_0584960 [Ricinus communis]
10 Hb_000282_030 0.1288428344 - - K(+) efflux antiporter 4 [Glycine soja]
11 Hb_145880_010 0.128938226 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
12 Hb_162150_010 0.1297581211 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000940_200 0.1301366633 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
14 Hb_000009_330 0.1353188181 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
15 Hb_027760_070 0.1360749501 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
16 Hb_146081_010 0.1370372534 - - PREDICTED: protein SCAI [Jatropha curcas]
17 Hb_008143_070 0.1387602495 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
18 Hb_000213_120 0.1404189834 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_002836_100 0.1411445388 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
20 Hb_000059_020 0.141700149 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]

Gene co-expression network

sample Hb_167234_010 Hb_167234_010 Hb_003211_010 Hb_003211_010 Hb_167234_010--Hb_003211_010 Hb_118026_010 Hb_118026_010 Hb_167234_010--Hb_118026_010 Hb_030736_070 Hb_030736_070 Hb_167234_010--Hb_030736_070 Hb_056987_010 Hb_056987_010 Hb_167234_010--Hb_056987_010 Hb_004586_280 Hb_004586_280 Hb_167234_010--Hb_004586_280 Hb_001055_030 Hb_001055_030 Hb_167234_010--Hb_001055_030 Hb_003211_010--Hb_001055_030 Hb_011716_090 Hb_011716_090 Hb_003211_010--Hb_011716_090 Hb_008143_070 Hb_008143_070 Hb_003211_010--Hb_008143_070 Hb_000856_180 Hb_000856_180 Hb_003211_010--Hb_000856_180 Hb_006588_150 Hb_006588_150 Hb_003211_010--Hb_006588_150 Hb_000282_030 Hb_000282_030 Hb_118026_010--Hb_000282_030 Hb_001205_200 Hb_001205_200 Hb_118026_010--Hb_001205_200 Hb_000357_110 Hb_000357_110 Hb_118026_010--Hb_000357_110 Hb_006916_040 Hb_006916_040 Hb_118026_010--Hb_006916_040 Hb_000076_160 Hb_000076_160 Hb_118026_010--Hb_000076_160 Hb_002078_220 Hb_002078_220 Hb_118026_010--Hb_002078_220 Hb_027760_070 Hb_027760_070 Hb_030736_070--Hb_027760_070 Hb_146081_010 Hb_146081_010 Hb_030736_070--Hb_146081_010 Hb_030736_070--Hb_008143_070 Hb_001033_050 Hb_001033_050 Hb_030736_070--Hb_001033_050 Hb_000457_140 Hb_000457_140 Hb_030736_070--Hb_000457_140 Hb_000237_190 Hb_000237_190 Hb_030736_070--Hb_000237_190 Hb_000958_150 Hb_000958_150 Hb_056987_010--Hb_000958_150 Hb_000264_080 Hb_000264_080 Hb_056987_010--Hb_000264_080 Hb_002284_170 Hb_002284_170 Hb_056987_010--Hb_002284_170 Hb_000139_320 Hb_000139_320 Hb_056987_010--Hb_000139_320 Hb_073171_090 Hb_073171_090 Hb_056987_010--Hb_073171_090 Hb_000302_170 Hb_000302_170 Hb_056987_010--Hb_000302_170 Hb_004994_090 Hb_004994_090 Hb_004586_280--Hb_004994_090 Hb_001235_140 Hb_001235_140 Hb_004586_280--Hb_001235_140 Hb_162150_010 Hb_162150_010 Hb_004586_280--Hb_162150_010 Hb_000213_120 Hb_000213_120 Hb_004586_280--Hb_000213_120 Hb_003097_170 Hb_003097_170 Hb_004586_280--Hb_003097_170 Hb_007894_130 Hb_007894_130 Hb_001055_030--Hb_007894_130 Hb_000236_410 Hb_000236_410 Hb_001055_030--Hb_000236_410 Hb_093084_070 Hb_093084_070 Hb_001055_030--Hb_093084_070 Hb_001055_030--Hb_008143_070 Hb_000009_330 Hb_000009_330 Hb_001055_030--Hb_000009_330 Hb_000622_250 Hb_000622_250 Hb_001055_030--Hb_000622_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8551 23.7067 12.0997 18.0583 11.6123 18.3924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.09651 9.97869 4.29324 21.1546 2.02687

CAGE analysis