Hb_000457_140

Information

Type -
Description -
Location Contig457: 180775-181518
Sequence    

Annotation

kegg
ID pop:POPTR_0001s36350g
description POPTRDRAFT_797910; hypothetical protein
nr
ID XP_012071050.1
description PREDICTED: transmembrane protein 136-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LCX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10171 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 136-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43466: 182305-187595 , PASA_asmbl_43467: 182305-187595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000457_140 0.0 - - PREDICTED: transmembrane protein 136-like [Jatropha curcas]
2 Hb_027760_070 0.0940577787 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
3 Hb_030736_070 0.1095256149 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
4 Hb_001205_110 0.1194978102 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
5 Hb_010697_040 0.1206511003 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
6 Hb_008143_070 0.1222325035 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
7 Hb_001055_030 0.1245279123 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
8 Hb_000359_140 0.1275087586 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
9 Hb_006663_030 0.130029062 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
10 Hb_000139_130 0.1337545326 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
11 Hb_012239_030 0.1341516459 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_003078_020 0.1375461086 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
13 Hb_001366_210 0.1385271697 - - cathepsin B, putative [Ricinus communis]
14 Hb_003211_010 0.1388793918 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
15 Hb_146081_010 0.1401299669 - - PREDICTED: protein SCAI [Jatropha curcas]
16 Hb_080451_010 0.1404833963 - - PREDICTED: ankyrin repeat-containing protein At2g01680 [Jatropha curcas]
17 Hb_000931_020 0.141624423 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
18 Hb_001033_050 0.14247546 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
19 Hb_004531_120 0.1442946627 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
20 Hb_131035_010 0.1446559936 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000457_140 Hb_000457_140 Hb_027760_070 Hb_027760_070 Hb_000457_140--Hb_027760_070 Hb_030736_070 Hb_030736_070 Hb_000457_140--Hb_030736_070 Hb_001205_110 Hb_001205_110 Hb_000457_140--Hb_001205_110 Hb_010697_040 Hb_010697_040 Hb_000457_140--Hb_010697_040 Hb_008143_070 Hb_008143_070 Hb_000457_140--Hb_008143_070 Hb_001055_030 Hb_001055_030 Hb_000457_140--Hb_001055_030 Hb_027760_070--Hb_030736_070 Hb_000139_130 Hb_000139_130 Hb_027760_070--Hb_000139_130 Hb_000359_140 Hb_000359_140 Hb_027760_070--Hb_000359_140 Hb_146081_010 Hb_146081_010 Hb_027760_070--Hb_146081_010 Hb_027760_070--Hb_008143_070 Hb_030736_070--Hb_146081_010 Hb_030736_070--Hb_008143_070 Hb_001033_050 Hb_001033_050 Hb_030736_070--Hb_001033_050 Hb_000237_190 Hb_000237_190 Hb_030736_070--Hb_000237_190 Hb_012239_030 Hb_012239_030 Hb_001205_110--Hb_012239_030 Hb_001205_110--Hb_010697_040 Hb_008749_030 Hb_008749_030 Hb_001205_110--Hb_008749_030 Hb_001205_110--Hb_000139_130 Hb_000608_260 Hb_000608_260 Hb_001205_110--Hb_000608_260 Hb_002213_040 Hb_002213_040 Hb_001205_110--Hb_002213_040 Hb_010697_040--Hb_000139_130 Hb_008253_020 Hb_008253_020 Hb_010697_040--Hb_008253_020 Hb_007508_080 Hb_007508_080 Hb_010697_040--Hb_007508_080 Hb_000046_070 Hb_000046_070 Hb_010697_040--Hb_000046_070 Hb_010712_090 Hb_010712_090 Hb_010697_040--Hb_010712_090 Hb_008143_070--Hb_001055_030 Hb_000622_250 Hb_000622_250 Hb_008143_070--Hb_000622_250 Hb_005143_030 Hb_005143_030 Hb_008143_070--Hb_005143_030 Hb_003498_120 Hb_003498_120 Hb_008143_070--Hb_003498_120 Hb_001318_020 Hb_001318_020 Hb_008143_070--Hb_001318_020 Hb_004668_060 Hb_004668_060 Hb_008143_070--Hb_004668_060 Hb_007894_130 Hb_007894_130 Hb_001055_030--Hb_007894_130 Hb_000236_410 Hb_000236_410 Hb_001055_030--Hb_000236_410 Hb_093084_070 Hb_093084_070 Hb_001055_030--Hb_093084_070 Hb_000009_330 Hb_000009_330 Hb_001055_030--Hb_000009_330 Hb_001055_030--Hb_000622_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.50909 12.4515 2.60821 14.3052 9.04914 8.11624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.82706 3.15855 2.9417 6.83672 2.33033

CAGE analysis