Hb_011716_090

Information

Type transcription factor
Description TF Family: HRT
Location Contig11716: 68764-71916
Sequence    

Annotation

kegg
ID pop:POPTR_0006s15450g
description POPTRDRAFT_762663; putative transciption factor family protein
nr
ID XP_002309221.2
description putative transciption factor family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H8V9
description Putative transciption factor family protein OS=Populus trichocarpa GN=POPTR_0006s15450g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05312: 69895-71920 , PASA_asmbl_05314: 55858-71896 , PASA_asmbl_05315: 71014-71896
cDNA
(Sanger)
(ID:Location)		 015_G05.ab1: 70537-71920 , 025_K13.ab1: 70483-71920

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011716_090 0.0 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
2 Hb_089140_030 0.098382258 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
3 Hb_000200_280 0.1005865143 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
4 Hb_002693_060 0.1033358896 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_000640_130 0.1058072761 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
6 Hb_002827_020 0.1072437606 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
7 Hb_003211_010 0.1080237876 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
8 Hb_001416_020 0.1127344705 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
9 Hb_008143_070 0.1134730728 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
10 Hb_001575_010 0.1136863607 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000740_110 0.1181609223 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01850 [Jatropha curcas]
12 Hb_002110_030 0.1190649005 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
13 Hb_001427_070 0.1193845572 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
14 Hb_005214_090 0.1217052563 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
15 Hb_000684_290 0.1217173858 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
16 Hb_002005_090 0.1240359093 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000976_040 0.1245064624 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
18 Hb_001269_140 0.1256978627 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
19 Hb_001621_130 0.1282700392 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
20 Hb_001105_160 0.128675049 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]

Gene co-expression network

sample Hb_011716_090 Hb_011716_090 Hb_089140_030 Hb_089140_030 Hb_011716_090--Hb_089140_030 Hb_000200_280 Hb_000200_280 Hb_011716_090--Hb_000200_280 Hb_002693_060 Hb_002693_060 Hb_011716_090--Hb_002693_060 Hb_000640_130 Hb_000640_130 Hb_011716_090--Hb_000640_130 Hb_002827_020 Hb_002827_020 Hb_011716_090--Hb_002827_020 Hb_003211_010 Hb_003211_010 Hb_011716_090--Hb_003211_010 Hb_089140_030--Hb_000200_280 Hb_000740_110 Hb_000740_110 Hb_089140_030--Hb_000740_110 Hb_005214_090 Hb_005214_090 Hb_089140_030--Hb_005214_090 Hb_001575_010 Hb_001575_010 Hb_089140_030--Hb_001575_010 Hb_000627_180 Hb_000627_180 Hb_089140_030--Hb_000627_180 Hb_000976_040 Hb_000976_040 Hb_000200_280--Hb_000976_040 Hb_000200_280--Hb_002827_020 Hb_011512_090 Hb_011512_090 Hb_000200_280--Hb_011512_090 Hb_002110_030 Hb_002110_030 Hb_000200_280--Hb_002110_030 Hb_001269_140 Hb_001269_140 Hb_002693_060--Hb_001269_140 Hb_001105_160 Hb_001105_160 Hb_002693_060--Hb_001105_160 Hb_000140_480 Hb_000140_480 Hb_002693_060--Hb_000140_480 Hb_001427_070 Hb_001427_070 Hb_002693_060--Hb_001427_070 Hb_083799_010 Hb_083799_010 Hb_002693_060--Hb_083799_010 Hb_000215_100 Hb_000215_100 Hb_000640_130--Hb_000215_100 Hb_001416_020 Hb_001416_020 Hb_000640_130--Hb_001416_020 Hb_000640_130--Hb_000976_040 Hb_002005_090 Hb_002005_090 Hb_000640_130--Hb_002005_090 Hb_000521_170 Hb_000521_170 Hb_000640_130--Hb_000521_170 Hb_002827_020--Hb_000640_130 Hb_006586_030 Hb_006586_030 Hb_002827_020--Hb_006586_030 Hb_002827_020--Hb_001416_020 Hb_000283_150 Hb_000283_150 Hb_002827_020--Hb_000283_150 Hb_001055_030 Hb_001055_030 Hb_003211_010--Hb_001055_030 Hb_167234_010 Hb_167234_010 Hb_003211_010--Hb_167234_010 Hb_008143_070 Hb_008143_070 Hb_003211_010--Hb_008143_070 Hb_000856_180 Hb_000856_180 Hb_003211_010--Hb_000856_180 Hb_006588_150 Hb_006588_150 Hb_003211_010--Hb_006588_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.181 25.0144 3.95681 14.4078 15.9788 18.9666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.21937 6.13495 8.29753 30.5655 4.62529

CAGE analysis