Hb_002693_060

Information

Type -
Description -
Location Contig2693: 90541-98554
Sequence    

Annotation

kegg
ID rcu:RCOM_0854780
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.11.25)
nr
ID XP_002517468.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9LFP7
description Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=2 SV=1
trembl
ID B9RUM3
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_0854780 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at5g15080 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28101: 91067-98408
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002693_060 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_001269_140 0.0989217304 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
3 Hb_001105_160 0.101569547 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
4 Hb_011716_090 0.1033358896 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
5 Hb_000140_480 0.1063189221 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
6 Hb_001427_070 0.1110869124 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
7 Hb_083799_010 0.1128078052 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_005081_020 0.1173212788 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
9 Hb_002391_210 0.1194024262 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
10 Hb_000856_180 0.1215493305 - - calcium-dependent protein kinase [Hevea brasiliensis]
11 Hb_001761_130 0.1219631786 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
12 Hb_008143_070 0.123110477 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
13 Hb_006355_090 0.1234042742 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
14 Hb_002307_280 0.1240380855 - - Endonuclease/exonuclease/phosphatase family protein isoform 3 [Theobroma cacao]
15 Hb_075315_010 0.1244493628 - - ornithine aminotransferase [Camellia sinensis]
16 Hb_002662_020 0.1251182099 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
17 Hb_011287_050 0.1252542385 - - PREDICTED: uncharacterized protein LOC105644786 [Jatropha curcas]
18 Hb_006663_030 0.126086203 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
19 Hb_003211_010 0.1263487013 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
20 Hb_017358_040 0.126386759 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_002693_060 Hb_002693_060 Hb_001269_140 Hb_001269_140 Hb_002693_060--Hb_001269_140 Hb_001105_160 Hb_001105_160 Hb_002693_060--Hb_001105_160 Hb_011716_090 Hb_011716_090 Hb_002693_060--Hb_011716_090 Hb_000140_480 Hb_000140_480 Hb_002693_060--Hb_000140_480 Hb_001427_070 Hb_001427_070 Hb_002693_060--Hb_001427_070 Hb_083799_010 Hb_083799_010 Hb_002693_060--Hb_083799_010 Hb_002307_280 Hb_002307_280 Hb_001269_140--Hb_002307_280 Hb_001761_130 Hb_001761_130 Hb_001269_140--Hb_001761_130 Hb_005081_020 Hb_005081_020 Hb_001269_140--Hb_005081_020 Hb_001269_140--Hb_001105_160 Hb_001434_080 Hb_001434_080 Hb_001269_140--Hb_001434_080 Hb_001123_050 Hb_001123_050 Hb_001269_140--Hb_001123_050 Hb_011287_050 Hb_011287_050 Hb_001105_160--Hb_011287_050 Hb_041327_010 Hb_041327_010 Hb_001105_160--Hb_041327_010 Hb_005568_040 Hb_005568_040 Hb_001105_160--Hb_005568_040 Hb_012092_060 Hb_012092_060 Hb_001105_160--Hb_012092_060 Hb_071130_010 Hb_071130_010 Hb_001105_160--Hb_071130_010 Hb_010809_010 Hb_010809_010 Hb_001105_160--Hb_010809_010 Hb_089140_030 Hb_089140_030 Hb_011716_090--Hb_089140_030 Hb_000200_280 Hb_000200_280 Hb_011716_090--Hb_000200_280 Hb_000640_130 Hb_000640_130 Hb_011716_090--Hb_000640_130 Hb_002827_020 Hb_002827_020 Hb_011716_090--Hb_002827_020 Hb_003211_010 Hb_003211_010 Hb_011716_090--Hb_003211_010 Hb_000140_480--Hb_001427_070 Hb_000152_660 Hb_000152_660 Hb_000140_480--Hb_000152_660 Hb_000739_100 Hb_000739_100 Hb_000140_480--Hb_000739_100 Hb_000140_480--Hb_001761_130 Hb_000347_440 Hb_000347_440 Hb_000140_480--Hb_000347_440 Hb_000856_310 Hb_000856_310 Hb_000140_480--Hb_000856_310 Hb_001427_070--Hb_001761_130 Hb_001427_070--Hb_000152_660 Hb_006831_040 Hb_006831_040 Hb_001427_070--Hb_006831_040 Hb_002391_210 Hb_002391_210 Hb_001427_070--Hb_002391_210 Hb_002110_030 Hb_002110_030 Hb_001427_070--Hb_002110_030 Hb_002272_170 Hb_002272_170 Hb_083799_010--Hb_002272_170 Hb_000395_220 Hb_000395_220 Hb_083799_010--Hb_000395_220 Hb_075315_010 Hb_075315_010 Hb_083799_010--Hb_075315_010 Hb_083799_010--Hb_005081_020 Hb_007426_140 Hb_007426_140 Hb_083799_010--Hb_007426_140 Hb_000260_660 Hb_000260_660 Hb_083799_010--Hb_000260_660
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.69271 14.5436 3.19782 16.3583 8.51461 12.8641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.84869 5.04663 8.29773 21.885 4.48624

CAGE analysis