Hb_002827_020

Information

Type -
Description -
Location Contig2827: 37094-39813
Sequence    

Annotation

kegg
ID rcu:RCOM_0865010
description leucine-rich repeat-containing protein, putative (EC:3.1.3.16)
nr
ID XP_012087262.1
description PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
swissprot
ID Q8S7M7
description Plant intracellular Ras-group-related LRR protein 5 OS=Oryza sativa subsp. japonica GN=IRL5 PE=2 SV=1
trembl
ID A0A067JYS5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24245 PE=4 SV=1
Gene Ontology
ID GO:0004721
description plant intracellular ras-group-related lrr protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002827_020 0.0 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
2 Hb_000200_280 0.0863068847 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
3 Hb_011716_090 0.1072437606 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
4 Hb_000640_130 0.1125168975 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
5 Hb_006586_030 0.1152271404 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
6 Hb_001416_020 0.1181211104 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
7 Hb_000283_150 0.1207025968 - - Ankyrin repeat family protein [Theobroma cacao]
8 Hb_089140_030 0.1264661191 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
9 Hb_000976_040 0.1305725839 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
10 Hb_001427_070 0.1320364025 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
11 Hb_001269_690 0.1364065016 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001104_240 0.1400626899 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
13 Hb_001514_130 0.140398853 - - hypothetical protein JCGZ_16073 [Jatropha curcas]
14 Hb_011930_070 0.1418885233 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
15 Hb_000684_290 0.1440952037 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
16 Hb_011512_090 0.1485389841 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
17 Hb_002110_030 0.1495985561 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
18 Hb_002005_090 0.1507548039 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002972_020 0.1533034416 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
20 Hb_007520_020 0.1533837107 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Hevea brasiliensis]

Gene co-expression network

sample Hb_002827_020 Hb_002827_020 Hb_000200_280 Hb_000200_280 Hb_002827_020--Hb_000200_280 Hb_011716_090 Hb_011716_090 Hb_002827_020--Hb_011716_090 Hb_000640_130 Hb_000640_130 Hb_002827_020--Hb_000640_130 Hb_006586_030 Hb_006586_030 Hb_002827_020--Hb_006586_030 Hb_001416_020 Hb_001416_020 Hb_002827_020--Hb_001416_020 Hb_000283_150 Hb_000283_150 Hb_002827_020--Hb_000283_150 Hb_000976_040 Hb_000976_040 Hb_000200_280--Hb_000976_040 Hb_089140_030 Hb_089140_030 Hb_000200_280--Hb_089140_030 Hb_000200_280--Hb_011716_090 Hb_011512_090 Hb_011512_090 Hb_000200_280--Hb_011512_090 Hb_002110_030 Hb_002110_030 Hb_000200_280--Hb_002110_030 Hb_011716_090--Hb_089140_030 Hb_002693_060 Hb_002693_060 Hb_011716_090--Hb_002693_060 Hb_011716_090--Hb_000640_130 Hb_003211_010 Hb_003211_010 Hb_011716_090--Hb_003211_010 Hb_000215_100 Hb_000215_100 Hb_000640_130--Hb_000215_100 Hb_000640_130--Hb_001416_020 Hb_000640_130--Hb_000976_040 Hb_002005_090 Hb_002005_090 Hb_000640_130--Hb_002005_090 Hb_000521_170 Hb_000521_170 Hb_000640_130--Hb_000521_170 Hb_001104_240 Hb_001104_240 Hb_006586_030--Hb_001104_240 Hb_001524_090 Hb_001524_090 Hb_006586_030--Hb_001524_090 Hb_000086_660 Hb_000086_660 Hb_006586_030--Hb_000086_660 Hb_001269_690 Hb_001269_690 Hb_006586_030--Hb_001269_690 Hb_006586_030--Hb_000200_280 Hb_001416_020--Hb_000521_170 Hb_001416_020--Hb_000283_150 Hb_001575_010 Hb_001575_010 Hb_001416_020--Hb_001575_010 Hb_005143_030 Hb_005143_030 Hb_001416_020--Hb_005143_030 Hb_001416_020--Hb_011716_090 Hb_000283_150--Hb_000640_130 Hb_000283_150--Hb_000521_170 Hb_000036_050 Hb_000036_050 Hb_000283_150--Hb_000036_050 Hb_020178_060 Hb_020178_060 Hb_000283_150--Hb_020178_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.02287 7.25524 0.506631 2.31148 3.89062 3.64445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.02914 1.35881 1.87011 10.1999 1.40156

CAGE analysis