Hb_000283_150

Information

Type -
Description -
Location Contig283: 132704-140278
Sequence    

Annotation

kegg
ID tcc:TCM_026317
description Ankyrin repeat family protein
nr
ID XP_007030542.1
description Ankyrin repeat family protein [Theobroma cacao]
swissprot
ID Q54DA8
description Protein STIP1 homolog OS=Dictyostelium discoideum GN=sti1 PE=3 SV=1
trembl
ID A0A061F958
description Ankyrin repeat family protein OS=Theobroma cacao GN=TCM_026317 PE=4 SV=1
Gene Ontology
ID GO:0000741
description ankyrin repeat family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000283_150 0.0 - - Ankyrin repeat family protein [Theobroma cacao]
2 Hb_001416_020 0.1072150874 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
3 Hb_000640_130 0.1168948291 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
4 Hb_002827_020 0.1207025968 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
5 Hb_000521_170 0.1379344886 - - PREDICTED: callose synthase 1 [Jatropha curcas]
6 Hb_000036_050 0.1410156354 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Camelina sativa]
7 Hb_020178_060 0.1414223145 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
8 Hb_000200_280 0.1520678624 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
9 Hb_000976_040 0.1526809151 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
10 Hb_011512_090 0.1590581337 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
11 Hb_002005_090 0.1607246399 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006586_030 0.1649207486 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
13 Hb_003640_030 0.1649354996 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
14 Hb_011716_090 0.1683321159 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
15 Hb_002374_220 0.1685438771 - - hypothetical protein CICLE_v10001597mg [Citrus clementina]
16 Hb_000032_310 0.1701942392 - - ring finger protein, putative [Ricinus communis]
17 Hb_012565_080 0.1702129762 - - serine/threonine kinase, putative [Ricinus communis]
18 Hb_007520_020 0.1709866252 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Hevea brasiliensis]
19 Hb_009848_030 0.1710473011 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
20 Hb_002016_040 0.1732505331 rubber biosynthesis Gene Name: SRPP8 PREDICTED: stress-related protein [Jatropha curcas]

Gene co-expression network

sample Hb_000283_150 Hb_000283_150 Hb_001416_020 Hb_001416_020 Hb_000283_150--Hb_001416_020 Hb_000640_130 Hb_000640_130 Hb_000283_150--Hb_000640_130 Hb_002827_020 Hb_002827_020 Hb_000283_150--Hb_002827_020 Hb_000521_170 Hb_000521_170 Hb_000283_150--Hb_000521_170 Hb_000036_050 Hb_000036_050 Hb_000283_150--Hb_000036_050 Hb_020178_060 Hb_020178_060 Hb_000283_150--Hb_020178_060 Hb_001416_020--Hb_000640_130 Hb_001416_020--Hb_000521_170 Hb_001575_010 Hb_001575_010 Hb_001416_020--Hb_001575_010 Hb_005143_030 Hb_005143_030 Hb_001416_020--Hb_005143_030 Hb_011716_090 Hb_011716_090 Hb_001416_020--Hb_011716_090 Hb_000215_100 Hb_000215_100 Hb_000640_130--Hb_000215_100 Hb_000976_040 Hb_000976_040 Hb_000640_130--Hb_000976_040 Hb_002005_090 Hb_002005_090 Hb_000640_130--Hb_002005_090 Hb_000640_130--Hb_011716_090 Hb_000640_130--Hb_000521_170 Hb_000200_280 Hb_000200_280 Hb_002827_020--Hb_000200_280 Hb_002827_020--Hb_011716_090 Hb_002827_020--Hb_000640_130 Hb_006586_030 Hb_006586_030 Hb_002827_020--Hb_006586_030 Hb_002827_020--Hb_001416_020 Hb_000032_310 Hb_000032_310 Hb_000521_170--Hb_000032_310 Hb_000932_070 Hb_000932_070 Hb_000521_170--Hb_000932_070 Hb_011828_030 Hb_011828_030 Hb_000521_170--Hb_011828_030 Hb_011671_230 Hb_011671_230 Hb_000521_170--Hb_011671_230 Hb_007520_020 Hb_007520_020 Hb_000036_050--Hb_007520_020 Hb_001514_130 Hb_001514_130 Hb_000036_050--Hb_001514_130 Hb_004136_040 Hb_004136_040 Hb_000036_050--Hb_004136_040 Hb_000036_050--Hb_002827_020 Hb_000036_050--Hb_000640_130 Hb_002903_130 Hb_002903_130 Hb_020178_060--Hb_002903_130 Hb_008948_160 Hb_008948_160 Hb_020178_060--Hb_008948_160 Hb_012565_080 Hb_012565_080 Hb_020178_060--Hb_012565_080 Hb_000538_190 Hb_000538_190 Hb_020178_060--Hb_000538_190 Hb_020178_060--Hb_000521_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.38071 6.40346 1.14134 1.63919 4.90987 3.72239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.26001 1.32184 0.551663 10.0232 1.59815

CAGE analysis