Hb_004136_040

Information

Type -
Description -
Location Contig4136: 24135-28333
Sequence    

Annotation

kegg
ID zma:100383766
description uncharacterized LOC100383766
nr
ID AAS65794.1
description putative protein kinase [Arabidopsis thaliana]
swissprot
ID -
description -
trembl
ID M0ZD67
description Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40967: 24498-25530 , PASA_asmbl_40968: 26918-28060
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004136_040 0.0 - - putative protein kinase [Arabidopsis thaliana]
2 Hb_008568_010 0.1351135101 - - Phosphoenolpyruvate carboxykinase [ATP], putative [Ricinus communis]
3 Hb_000976_040 0.139603106 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
4 Hb_000003_340 0.143541437 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
5 Hb_000120_610 0.1454207369 - - mitotic control protein dis3, putative [Ricinus communis]
6 Hb_000264_100 0.1468368413 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001504_190 0.14708596 - - double-stranded RNA binding protein, putative [Ricinus communis]
8 Hb_004920_130 0.1485365136 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
9 Hb_089497_010 0.1485412496 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
10 Hb_000449_050 0.1489355801 - - Protein bem46, putative [Ricinus communis]
11 Hb_110482_010 0.1496760394 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
12 Hb_005260_010 0.1497464363 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
13 Hb_003206_030 0.1506385529 - - PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]
14 Hb_002163_010 0.1525391092 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
15 Hb_002157_050 0.1533359426 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
16 Hb_002659_060 0.1552331535 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
17 Hb_003780_090 0.1557336741 - - PREDICTED: transcription factor bHLH128 [Jatropha curcas]
18 Hb_000107_040 0.1572433027 - - nuclear pore complex protein nup153, putative [Ricinus communis]
19 Hb_000390_100 0.1579758283 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
20 Hb_000036_050 0.1579834433 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Camelina sativa]

Gene co-expression network

sample Hb_004136_040 Hb_004136_040 Hb_008568_010 Hb_008568_010 Hb_004136_040--Hb_008568_010 Hb_000976_040 Hb_000976_040 Hb_004136_040--Hb_000976_040 Hb_000003_340 Hb_000003_340 Hb_004136_040--Hb_000003_340 Hb_000120_610 Hb_000120_610 Hb_004136_040--Hb_000120_610 Hb_000264_100 Hb_000264_100 Hb_004136_040--Hb_000264_100 Hb_001504_190 Hb_001504_190 Hb_004136_040--Hb_001504_190 Hb_010661_050 Hb_010661_050 Hb_008568_010--Hb_010661_050 Hb_002157_050 Hb_002157_050 Hb_008568_010--Hb_002157_050 Hb_000505_020 Hb_000505_020 Hb_008568_010--Hb_000505_020 Hb_000109_100 Hb_000109_100 Hb_008568_010--Hb_000109_100 Hb_008568_010--Hb_000120_610 Hb_000821_010 Hb_000821_010 Hb_008568_010--Hb_000821_010 Hb_000853_120 Hb_000853_120 Hb_000976_040--Hb_000853_120 Hb_000200_280 Hb_000200_280 Hb_000976_040--Hb_000200_280 Hb_011512_090 Hb_011512_090 Hb_000976_040--Hb_011512_090 Hb_156850_070 Hb_156850_070 Hb_000976_040--Hb_156850_070 Hb_000640_130 Hb_000640_130 Hb_000976_040--Hb_000640_130 Hb_005143_030 Hb_005143_030 Hb_000976_040--Hb_005143_030 Hb_000003_340--Hb_001504_190 Hb_000120_420 Hb_000120_420 Hb_000003_340--Hb_000120_420 Hb_000181_360 Hb_000181_360 Hb_000003_340--Hb_000181_360 Hb_000449_050 Hb_000449_050 Hb_000003_340--Hb_000449_050 Hb_001511_110 Hb_001511_110 Hb_000003_340--Hb_001511_110 Hb_000120_610--Hb_000264_100 Hb_000594_020 Hb_000594_020 Hb_000120_610--Hb_000594_020 Hb_002659_060 Hb_002659_060 Hb_000120_610--Hb_002659_060 Hb_140049_020 Hb_140049_020 Hb_000120_610--Hb_140049_020 Hb_004899_070 Hb_004899_070 Hb_000120_610--Hb_004899_070 Hb_004970_160 Hb_004970_160 Hb_000120_610--Hb_004970_160 Hb_000997_030 Hb_000997_030 Hb_000264_100--Hb_000997_030 Hb_030565_090 Hb_030565_090 Hb_000264_100--Hb_030565_090 Hb_000264_100--Hb_140049_020 Hb_000264_100--Hb_000594_020 Hb_000264_100--Hb_004899_070 Hb_144824_010 Hb_144824_010 Hb_001504_190--Hb_144824_010 Hb_002477_150 Hb_002477_150 Hb_001504_190--Hb_002477_150 Hb_001504_190--Hb_000449_050 Hb_009028_030 Hb_009028_030 Hb_001504_190--Hb_009028_030 Hb_001999_250 Hb_001999_250 Hb_001504_190--Hb_001999_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4972 14.6804 2.81833 2.39863 10.8182 7.08312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.42396 4.10474 1.08255 11.8712 4.36088

CAGE analysis