Hb_000003_340

Information

Type -
Description -
Location Contig3: 208491-209557
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06040g
description POPTRDRAFT_814836; hypothetical protein
nr
ID XP_012068603.1
description PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
swissprot
ID Q39096
description Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana GN=ERD15 PE=1 SV=1
trembl
ID A0A067KZS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24492 PE=4 SV=1
Gene Ontology
ID GO:0006950
description protein early responsive to dehydration 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31406: 208897-209504 , PASA_asmbl_31407: 208850-209504
cDNA
(Sanger)
(ID:Location)		 032_F23.ab1: 208850-209504

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_340 0.0 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
2 Hb_001504_190 0.1312786812 - - double-stranded RNA binding protein, putative [Ricinus communis]
3 Hb_000120_420 0.1406047941 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
4 Hb_000181_360 0.143380521 - - PREDICTED: uncharacterized protein LOC105644273 [Jatropha curcas]
5 Hb_004136_040 0.143541437 - - putative protein kinase [Arabidopsis thaliana]
6 Hb_000449_050 0.1439446122 - - Protein bem46, putative [Ricinus communis]
7 Hb_001511_110 0.1531888033 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
8 Hb_003430_030 0.1531890479 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
9 Hb_130389_010 0.1607708829 - - PREDICTED: la protein 1 [Jatropha curcas]
10 Hb_003780_090 0.1637672276 - - PREDICTED: transcription factor bHLH128 [Jatropha curcas]
11 Hb_008568_010 0.164991086 - - Phosphoenolpyruvate carboxykinase [ATP], putative [Ricinus communis]
12 Hb_000327_080 0.1688211945 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
13 Hb_002157_050 0.1690950685 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
14 Hb_110482_010 0.1718119905 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
15 Hb_008406_040 0.1733247512 - - -
16 Hb_000116_510 0.1748583972 - - PREDICTED: RNA-binding protein 24-A-like isoform X2 [Jatropha curcas]
17 Hb_011909_060 0.1751235904 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
18 Hb_005260_010 0.1751751123 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
19 Hb_002173_020 0.1762161281 - - PREDICTED: uncharacterized protein LOC105801078 [Gossypium raimondii]
20 Hb_002477_150 0.1776793669 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000003_340 Hb_000003_340 Hb_001504_190 Hb_001504_190 Hb_000003_340--Hb_001504_190 Hb_000120_420 Hb_000120_420 Hb_000003_340--Hb_000120_420 Hb_000181_360 Hb_000181_360 Hb_000003_340--Hb_000181_360 Hb_004136_040 Hb_004136_040 Hb_000003_340--Hb_004136_040 Hb_000449_050 Hb_000449_050 Hb_000003_340--Hb_000449_050 Hb_001511_110 Hb_001511_110 Hb_000003_340--Hb_001511_110 Hb_144824_010 Hb_144824_010 Hb_001504_190--Hb_144824_010 Hb_002477_150 Hb_002477_150 Hb_001504_190--Hb_002477_150 Hb_001504_190--Hb_000449_050 Hb_009028_030 Hb_009028_030 Hb_001504_190--Hb_009028_030 Hb_001999_250 Hb_001999_250 Hb_001504_190--Hb_001999_250 Hb_011909_060 Hb_011909_060 Hb_000120_420--Hb_011909_060 Hb_000363_280 Hb_000363_280 Hb_000120_420--Hb_000363_280 Hb_000227_310 Hb_000227_310 Hb_000120_420--Hb_000227_310 Hb_000264_080 Hb_000264_080 Hb_000120_420--Hb_000264_080 Hb_167381_020 Hb_167381_020 Hb_000120_420--Hb_167381_020 Hb_003430_030 Hb_003430_030 Hb_000120_420--Hb_003430_030 Hb_001231_030 Hb_001231_030 Hb_000181_360--Hb_001231_030 Hb_000327_080 Hb_000327_080 Hb_000181_360--Hb_000327_080 Hb_004899_070 Hb_004899_070 Hb_000181_360--Hb_004899_070 Hb_000265_250 Hb_000265_250 Hb_000181_360--Hb_000265_250 Hb_000062_470 Hb_000062_470 Hb_000181_360--Hb_000062_470 Hb_000753_100 Hb_000753_100 Hb_000181_360--Hb_000753_100 Hb_008568_010 Hb_008568_010 Hb_004136_040--Hb_008568_010 Hb_000976_040 Hb_000976_040 Hb_004136_040--Hb_000976_040 Hb_000120_610 Hb_000120_610 Hb_004136_040--Hb_000120_610 Hb_000264_100 Hb_000264_100 Hb_004136_040--Hb_000264_100 Hb_004136_040--Hb_001504_190 Hb_001189_130 Hb_001189_130 Hb_000449_050--Hb_001189_130 Hb_000340_110 Hb_000340_110 Hb_000449_050--Hb_000340_110 Hb_001638_040 Hb_001638_040 Hb_000449_050--Hb_001638_040 Hb_000449_050--Hb_002477_150 Hb_124677_060 Hb_124677_060 Hb_000449_050--Hb_124677_060 Hb_004032_180 Hb_004032_180 Hb_000449_050--Hb_004032_180 Hb_029223_050 Hb_029223_050 Hb_001511_110--Hb_029223_050 Hb_001511_110--Hb_000340_110 Hb_001141_370 Hb_001141_370 Hb_001511_110--Hb_001141_370 Hb_000832_320 Hb_000832_320 Hb_001511_110--Hb_000832_320 Hb_000243_380 Hb_000243_380 Hb_001511_110--Hb_000243_380 Hb_004371_010 Hb_004371_010 Hb_001511_110--Hb_004371_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.84019 6.91481 2.36245 0.702286 3.58573 2.44076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.477 0.602925 0.169266 2.90017 1.31589

CAGE analysis