Hb_000181_360

Information

Type -
Description -
Location Contig181: 335581-341443
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41060g
description hypothetical protein
nr
ID XP_012084960.1
description PREDICTED: uncharacterized protein LOC105644273 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K5H0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20994 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17552: 337952-340122 , PASA_asmbl_17553: 337895-354826
cDNA
(Sanger)
(ID:Location)		 004_D21.ab1: 337895-354824

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_360 0.0 - - PREDICTED: uncharacterized protein LOC105644273 [Jatropha curcas]
2 Hb_001231_030 0.1090151352 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
3 Hb_000327_080 0.1112223745 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
4 Hb_004899_070 0.1121201036 - - PREDICTED: RRP12-like protein [Jatropha curcas]
5 Hb_000265_250 0.1142863031 - - auxilin, putative [Ricinus communis]
6 Hb_000062_470 0.1146226525 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
7 Hb_000753_100 0.1155864505 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
8 Hb_000120_620 0.1159135265 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
9 Hb_002997_160 0.1169767444 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Jatropha curcas]
10 Hb_001221_160 0.1186482462 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
11 Hb_003858_090 0.1209650973 - - Filamin-A-interacting protein, putative [Ricinus communis]
12 Hb_003710_040 0.1221653575 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
13 Hb_009028_030 0.1235302519 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
14 Hb_003540_160 0.1236786736 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
15 Hb_004429_160 0.1250268635 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
16 Hb_005333_030 0.1251357403 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
17 Hb_015475_020 0.1252973177 - - importin beta-1, putative [Ricinus communis]
18 Hb_000197_290 0.125605428 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
19 Hb_000574_510 0.1259217921 - - protein kinase, putative [Ricinus communis]
20 Hb_000116_510 0.1271534295 - - PREDICTED: RNA-binding protein 24-A-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000181_360 Hb_000181_360 Hb_001231_030 Hb_001231_030 Hb_000181_360--Hb_001231_030 Hb_000327_080 Hb_000327_080 Hb_000181_360--Hb_000327_080 Hb_004899_070 Hb_004899_070 Hb_000181_360--Hb_004899_070 Hb_000265_250 Hb_000265_250 Hb_000181_360--Hb_000265_250 Hb_000062_470 Hb_000062_470 Hb_000181_360--Hb_000062_470 Hb_000753_100 Hb_000753_100 Hb_000181_360--Hb_000753_100 Hb_006787_060 Hb_006787_060 Hb_001231_030--Hb_006787_060 Hb_002902_020 Hb_002902_020 Hb_001231_030--Hb_002902_020 Hb_004629_010 Hb_004629_010 Hb_001231_030--Hb_004629_010 Hb_002997_160 Hb_002997_160 Hb_001231_030--Hb_002997_160 Hb_005104_010 Hb_005104_010 Hb_001231_030--Hb_005104_010 Hb_001231_030--Hb_000753_100 Hb_005214_150 Hb_005214_150 Hb_000327_080--Hb_005214_150 Hb_009449_090 Hb_009449_090 Hb_000327_080--Hb_009449_090 Hb_007818_040 Hb_007818_040 Hb_000327_080--Hb_007818_040 Hb_011671_230 Hb_011671_230 Hb_000327_080--Hb_011671_230 Hb_002571_030 Hb_002571_030 Hb_000327_080--Hb_002571_030 Hb_007576_220 Hb_007576_220 Hb_000327_080--Hb_007576_220 Hb_000098_130 Hb_000098_130 Hb_004899_070--Hb_000098_130 Hb_000261_290 Hb_000261_290 Hb_004899_070--Hb_000261_290 Hb_000120_620 Hb_000120_620 Hb_004899_070--Hb_000120_620 Hb_004970_160 Hb_004970_160 Hb_004899_070--Hb_004970_160 Hb_000640_200 Hb_000640_200 Hb_004899_070--Hb_000640_200 Hb_000813_100 Hb_000813_100 Hb_004899_070--Hb_000813_100 Hb_011465_030 Hb_011465_030 Hb_000265_250--Hb_011465_030 Hb_002477_150 Hb_002477_150 Hb_000265_250--Hb_002477_150 Hb_148209_020 Hb_148209_020 Hb_000265_250--Hb_148209_020 Hb_009028_030 Hb_009028_030 Hb_000265_250--Hb_009028_030 Hb_001247_230 Hb_001247_230 Hb_000265_250--Hb_001247_230 Hb_002849_080 Hb_002849_080 Hb_000265_250--Hb_002849_080 Hb_000191_130 Hb_000191_130 Hb_000062_470--Hb_000191_130 Hb_000917_160 Hb_000917_160 Hb_000062_470--Hb_000917_160 Hb_010417_060 Hb_010417_060 Hb_000062_470--Hb_010417_060 Hb_000661_200 Hb_000661_200 Hb_000062_470--Hb_000661_200 Hb_004429_160 Hb_004429_160 Hb_000062_470--Hb_004429_160 Hb_007813_030 Hb_007813_030 Hb_000062_470--Hb_007813_030 Hb_000032_010 Hb_000032_010 Hb_000753_100--Hb_000032_010 Hb_003540_160 Hb_003540_160 Hb_000753_100--Hb_003540_160 Hb_003040_020 Hb_003040_020 Hb_000753_100--Hb_003040_020 Hb_001117_190 Hb_001117_190 Hb_000753_100--Hb_001117_190 Hb_140049_020 Hb_140049_020 Hb_000753_100--Hb_140049_020 Hb_005188_060 Hb_005188_060 Hb_000753_100--Hb_005188_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.80309 6.35946 2.25176 1.29026 5.57156 4.46191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.50577 0.535868 0.474561 2.34575 1.99538

CAGE analysis