Hb_001638_040

Information

Type -
Description -
Location Contig1638: 65202-70107
Sequence    

Annotation

kegg
ID gmx:100815258
description nucleobase-ascorbate transporter 3-like
nr
ID KHN45346.1
description Nucleobase-ascorbate transporter 3 [Glycine soja]
swissprot
ID Q94C70
description Nucleobase-ascorbate transporter 2 OS=Arabidopsis thaliana GN=NAT2 PE=2 SV=2
trembl
ID A0A0B2SF38
description Nucleobase-ascorbate transporter 3 OS=Glycine soja GN=glysoja_047620 PE=4 SV=1
Gene Ontology
ID GO:0016020
description pigment defective embryo 135 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14979: 65392-70012 , PASA_asmbl_14980: 67783-70012 , PASA_asmbl_14981: 65317-70026 , PASA_asmbl_14982: 69190-69707 , PASA_asmbl_14983: 67494-67782 , PASA_asmbl_14984: 65392-66165
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_040 0.0 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
2 Hb_010831_020 0.1080184837 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_000540_120 0.1095001676 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
4 Hb_000449_050 0.1129509709 - - Protein bem46, putative [Ricinus communis]
5 Hb_164010_070 0.1136037839 - - Paramyosin, putative [Ricinus communis]
6 Hb_000853_030 0.116866758 - - sucrose synthase 2 [Hevea brasiliensis]
7 Hb_002739_150 0.123171571 - - Uncharacterized protein TCM_016791 [Theobroma cacao]
8 Hb_002316_050 0.1244605237 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012226_010 0.1262383831 - - PREDICTED: protein DGCR14 [Jatropha curcas]
10 Hb_124677_060 0.1275507656 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
11 Hb_000340_110 0.127553659 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
12 Hb_001220_030 0.1276269272 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
13 Hb_001189_130 0.1294146601 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
14 Hb_000243_380 0.1332749598 - - PREDICTED: histone H1 [Jatropha curcas]
15 Hb_011465_030 0.1339294559 - - PREDICTED: B2 protein [Jatropha curcas]
16 Hb_000140_070 0.1408250346 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
17 Hb_001053_030 0.1411016116 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
18 Hb_000932_070 0.1429289879 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
19 Hb_000836_120 0.1453169092 - - syntaxin, putative [Ricinus communis]
20 Hb_084429_010 0.1455751533 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]

Gene co-expression network

sample Hb_001638_040 Hb_001638_040 Hb_010831_020 Hb_010831_020 Hb_001638_040--Hb_010831_020 Hb_000540_120 Hb_000540_120 Hb_001638_040--Hb_000540_120 Hb_000449_050 Hb_000449_050 Hb_001638_040--Hb_000449_050 Hb_164010_070 Hb_164010_070 Hb_001638_040--Hb_164010_070 Hb_000853_030 Hb_000853_030 Hb_001638_040--Hb_000853_030 Hb_002739_150 Hb_002739_150 Hb_001638_040--Hb_002739_150 Hb_010831_020--Hb_000540_120 Hb_001691_150 Hb_001691_150 Hb_010831_020--Hb_001691_150 Hb_002316_050 Hb_002316_050 Hb_010831_020--Hb_002316_050 Hb_010831_020--Hb_002739_150 Hb_155702_010 Hb_155702_010 Hb_010831_020--Hb_155702_010 Hb_011465_030 Hb_011465_030 Hb_000540_120--Hb_011465_030 Hb_007403_050 Hb_007403_050 Hb_000540_120--Hb_007403_050 Hb_001189_130 Hb_001189_130 Hb_000540_120--Hb_001189_130 Hb_000140_070 Hb_000140_070 Hb_000540_120--Hb_000140_070 Hb_003125_030 Hb_003125_030 Hb_000540_120--Hb_003125_030 Hb_000449_050--Hb_001189_130 Hb_000340_110 Hb_000340_110 Hb_000449_050--Hb_000340_110 Hb_002477_150 Hb_002477_150 Hb_000449_050--Hb_002477_150 Hb_124677_060 Hb_124677_060 Hb_000449_050--Hb_124677_060 Hb_004032_180 Hb_004032_180 Hb_000449_050--Hb_004032_180 Hb_164010_070--Hb_000340_110 Hb_144824_010 Hb_144824_010 Hb_164010_070--Hb_144824_010 Hb_164010_070--Hb_124677_060 Hb_006683_040 Hb_006683_040 Hb_164010_070--Hb_006683_040 Hb_001053_030 Hb_001053_030 Hb_164010_070--Hb_001053_030 Hb_000932_070 Hb_000932_070 Hb_164010_070--Hb_000932_070 Hb_000853_030--Hb_164010_070 Hb_000390_100 Hb_000390_100 Hb_000853_030--Hb_000390_100 Hb_000853_030--Hb_000932_070 Hb_000853_030--Hb_002739_150 Hb_001396_260 Hb_001396_260 Hb_000853_030--Hb_001396_260 Hb_001055_030 Hb_001055_030 Hb_002739_150--Hb_001055_030 Hb_156850_070 Hb_156850_070 Hb_002739_150--Hb_156850_070 Hb_006663_030 Hb_006663_030 Hb_002739_150--Hb_006663_030 Hb_080451_010 Hb_080451_010 Hb_002739_150--Hb_080451_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.9614 112.919 6.8661 24.9361 48.36 46.355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.0151 15.9091 14.3575 26.1677 5.24161

CAGE analysis