Hb_006663_030

Information

Type -
Description -
Location Contig6663: 52028-54952
Sequence    

Annotation

kegg
ID rcu:RCOM_0205890
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_002528007.1
description Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
swissprot
ID Q9M088
description Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1
trembl
ID B9SPT8
description Glucan endo-1,3-beta-glucosidase, putative OS=Ricinus communis GN=RCOM_0205890 PE=3 SV=1
Gene Ontology
ID GO:0004553
description glucan endo- -beta-glucosidase 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53257: 52052-54915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006663_030 0.0 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
2 Hb_156850_070 0.1212454042 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002693_060 0.126086203 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
4 Hb_000457_140 0.130029062 - - PREDICTED: transmembrane protein 136-like [Jatropha curcas]
5 Hb_032808_030 0.1300478303 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
6 Hb_001894_120 0.1309872938 - - nucleoredoxin, putative [Ricinus communis]
7 Hb_002739_150 0.1339729483 - - Uncharacterized protein TCM_016791 [Theobroma cacao]
8 Hb_001055_030 0.1362679989 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
9 Hb_003078_020 0.1381737816 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
10 Hb_008143_070 0.1382430985 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
11 Hb_011716_090 0.1388491095 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
12 Hb_089140_030 0.1388505923 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
13 Hb_003211_010 0.1390533033 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
14 Hb_001105_160 0.1403495228 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
15 Hb_000236_410 0.1405493434 - - Paramyosin, putative [Ricinus communis]
16 Hb_002662_020 0.1411055213 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
17 Hb_000094_310 0.1429906898 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
18 Hb_010809_010 0.1447730343 - - Na+/H+ antiporter [Populus euphratica]
19 Hb_000418_070 0.1457124887 - - auxin:hydrogen symporter, putative [Ricinus communis]
20 Hb_170487_020 0.1458299756 - - hypothetical protein JCGZ_17178 [Jatropha curcas]

Gene co-expression network

sample Hb_006663_030 Hb_006663_030 Hb_156850_070 Hb_156850_070 Hb_006663_030--Hb_156850_070 Hb_002693_060 Hb_002693_060 Hb_006663_030--Hb_002693_060 Hb_000457_140 Hb_000457_140 Hb_006663_030--Hb_000457_140 Hb_032808_030 Hb_032808_030 Hb_006663_030--Hb_032808_030 Hb_001894_120 Hb_001894_120 Hb_006663_030--Hb_001894_120 Hb_002739_150 Hb_002739_150 Hb_006663_030--Hb_002739_150 Hb_000622_250 Hb_000622_250 Hb_156850_070--Hb_000622_250 Hb_000740_110 Hb_000740_110 Hb_156850_070--Hb_000740_110 Hb_000976_040 Hb_000976_040 Hb_156850_070--Hb_000976_040 Hb_005143_030 Hb_005143_030 Hb_156850_070--Hb_005143_030 Hb_005214_090 Hb_005214_090 Hb_156850_070--Hb_005214_090 Hb_000627_180 Hb_000627_180 Hb_156850_070--Hb_000627_180 Hb_001269_140 Hb_001269_140 Hb_002693_060--Hb_001269_140 Hb_001105_160 Hb_001105_160 Hb_002693_060--Hb_001105_160 Hb_011716_090 Hb_011716_090 Hb_002693_060--Hb_011716_090 Hb_000140_480 Hb_000140_480 Hb_002693_060--Hb_000140_480 Hb_001427_070 Hb_001427_070 Hb_002693_060--Hb_001427_070 Hb_083799_010 Hb_083799_010 Hb_002693_060--Hb_083799_010 Hb_027760_070 Hb_027760_070 Hb_000457_140--Hb_027760_070 Hb_030736_070 Hb_030736_070 Hb_000457_140--Hb_030736_070 Hb_001205_110 Hb_001205_110 Hb_000457_140--Hb_001205_110 Hb_010697_040 Hb_010697_040 Hb_000457_140--Hb_010697_040 Hb_008143_070 Hb_008143_070 Hb_000457_140--Hb_008143_070 Hb_001055_030 Hb_001055_030 Hb_000457_140--Hb_001055_030 Hb_000236_410 Hb_000236_410 Hb_032808_030--Hb_000236_410 Hb_000213_120 Hb_000213_120 Hb_032808_030--Hb_000213_120 Hb_000925_140 Hb_000925_140 Hb_032808_030--Hb_000925_140 Hb_002662_020 Hb_002662_020 Hb_032808_030--Hb_002662_020 Hb_000105_040 Hb_000105_040 Hb_032808_030--Hb_000105_040 Hb_032808_030--Hb_001105_160 Hb_000856_180 Hb_000856_180 Hb_001894_120--Hb_000856_180 Hb_003071_020 Hb_003071_020 Hb_001894_120--Hb_003071_020 Hb_013394_080 Hb_013394_080 Hb_001894_120--Hb_013394_080 Hb_010222_070 Hb_010222_070 Hb_001894_120--Hb_010222_070 Hb_003373_030 Hb_003373_030 Hb_001894_120--Hb_003373_030 Hb_011311_020 Hb_011311_020 Hb_001894_120--Hb_011311_020 Hb_002739_150--Hb_001055_030 Hb_001638_040 Hb_001638_040 Hb_002739_150--Hb_001638_040 Hb_002739_150--Hb_156850_070 Hb_080451_010 Hb_080451_010 Hb_002739_150--Hb_080451_010 Hb_010831_020 Hb_010831_020 Hb_002739_150--Hb_010831_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.1053 9.69679 0.639002 8.42049 6.64456 4.70723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.15814 2.73853 4.14009 7.16627 2.43243

CAGE analysis