Hb_003373_030

Information

Type -
Description -
Location Contig3373: 33881-39431
Sequence    

Annotation

kegg
ID rcu:RCOM_1157200
description serine/threonine-protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012087990.1
description PREDICTED: serine/threonine-protein kinase ATG1 [Jatropha curcas]
swissprot
ID Q52EB3
description Serine/threonine-protein kinase ATG1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=ATG1 PE=1 SV=1
trembl
ID A0A067JKN6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25110 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase atg1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35308: 34147-37086
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003373_030 0.0 - - PREDICTED: serine/threonine-protein kinase ATG1 [Jatropha curcas]
2 Hb_004143_040 0.0806132285 - - argininosuccinate lyase, putative [Ricinus communis]
3 Hb_008770_030 0.0839751587 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
4 Hb_000866_170 0.0842558202 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_032278_030 0.0893816147 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_015807_150 0.0900777426 - - actin binding protein, putative [Ricinus communis]
7 Hb_000890_210 0.0959704274 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
8 Hb_008770_040 0.0969124227 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Malus domestica]
9 Hb_000245_040 0.0981232464 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
10 Hb_172632_110 0.0990943811 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
11 Hb_000023_280 0.1002649352 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
12 Hb_001377_510 0.1009368909 - - ormdl, putative [Ricinus communis]
13 Hb_000185_030 0.101365546 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
14 Hb_001205_240 0.1026536857 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
15 Hb_033772_030 0.1027444367 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
16 Hb_006922_010 0.1028209526 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
17 Hb_017387_010 0.1036424994 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
18 Hb_000107_490 0.1045740819 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
19 Hb_009627_030 0.1052024891 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
20 Hb_002662_020 0.1053891892 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]

Gene co-expression network

sample Hb_003373_030 Hb_003373_030 Hb_004143_040 Hb_004143_040 Hb_003373_030--Hb_004143_040 Hb_008770_030 Hb_008770_030 Hb_003373_030--Hb_008770_030 Hb_000866_170 Hb_000866_170 Hb_003373_030--Hb_000866_170 Hb_032278_030 Hb_032278_030 Hb_003373_030--Hb_032278_030 Hb_015807_150 Hb_015807_150 Hb_003373_030--Hb_015807_150 Hb_000890_210 Hb_000890_210 Hb_003373_030--Hb_000890_210 Hb_000023_280 Hb_000023_280 Hb_004143_040--Hb_000023_280 Hb_000116_410 Hb_000116_410 Hb_004143_040--Hb_000116_410 Hb_002662_020 Hb_002662_020 Hb_004143_040--Hb_002662_020 Hb_003761_010 Hb_003761_010 Hb_004143_040--Hb_003761_010 Hb_001205_240 Hb_001205_240 Hb_004143_040--Hb_001205_240 Hb_000710_060 Hb_000710_060 Hb_008770_030--Hb_000710_060 Hb_008770_030--Hb_015807_150 Hb_000297_010 Hb_000297_010 Hb_008770_030--Hb_000297_010 Hb_033772_030 Hb_033772_030 Hb_008770_030--Hb_033772_030 Hb_019863_070 Hb_019863_070 Hb_008770_030--Hb_019863_070 Hb_000185_030 Hb_000185_030 Hb_008770_030--Hb_000185_030 Hb_000245_040 Hb_000245_040 Hb_000866_170--Hb_000245_040 Hb_000866_170--Hb_000297_010 Hb_000395_190 Hb_000395_190 Hb_000866_170--Hb_000395_190 Hb_000866_170--Hb_000890_210 Hb_004724_150 Hb_004724_150 Hb_000866_170--Hb_004724_150 Hb_001341_170 Hb_001341_170 Hb_000866_170--Hb_001341_170 Hb_032278_030--Hb_008770_030 Hb_000230_390 Hb_000230_390 Hb_032278_030--Hb_000230_390 Hb_007508_090 Hb_007508_090 Hb_032278_030--Hb_007508_090 Hb_032278_030--Hb_004143_040 Hb_032278_030--Hb_000866_170 Hb_015807_150--Hb_019863_070 Hb_002818_030 Hb_002818_030 Hb_015807_150--Hb_002818_030 Hb_015934_040 Hb_015934_040 Hb_015807_150--Hb_015934_040 Hb_000032_520 Hb_000032_520 Hb_015807_150--Hb_000032_520 Hb_015807_150--Hb_000297_010 Hb_000107_490 Hb_000107_490 Hb_000890_210--Hb_000107_490 Hb_000890_210--Hb_001341_170 Hb_002213_070 Hb_002213_070 Hb_000890_210--Hb_002213_070 Hb_000083_120 Hb_000083_120 Hb_000890_210--Hb_000083_120 Hb_004117_310 Hb_004117_310 Hb_000890_210--Hb_004117_310 Hb_000890_210--Hb_000245_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.21439 7.62405 2.01186 6.83255 3.47018 5.80611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.36903 5.57561 6.33008 7.09471 2.7859

CAGE analysis