Hb_002739_150

Information

Type -
Description -
Location Contig2739: 138226-144491
Sequence    

Annotation

kegg
ID tcc:TCM_016791
description hypothetical protein
nr
ID XP_007031339.1
description Uncharacterized protein TCM_016791 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EBA4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_016791 PE=4 SV=1
Gene Ontology
ID GO:0005783
description Uncharacterized protein TCM_016791

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28649: 138302-144475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002739_150 0.0 - - Uncharacterized protein TCM_016791 [Theobroma cacao]
2 Hb_001055_030 0.1210977115 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
3 Hb_001638_040 0.123171571 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
4 Hb_156850_070 0.1286197716 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006663_030 0.1339729483 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
6 Hb_080451_010 0.1343217115 - - PREDICTED: ankyrin repeat-containing protein At2g01680 [Jatropha curcas]
7 Hb_010831_020 0.1351189645 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_144744_010 0.135832832 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
9 Hb_000627_180 0.1372645086 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000622_250 0.1400553969 - - atpob1, putative [Ricinus communis]
11 Hb_008143_070 0.1411305327 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
12 Hb_000236_410 0.1422037391 - - Paramyosin, putative [Ricinus communis]
13 Hb_000261_190 0.1433490056 - - PREDICTED: uncharacterized protein At4g04980-like [Jatropha curcas]
14 Hb_000406_110 0.1435884915 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
15 Hb_000540_120 0.1471715391 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
16 Hb_104265_030 0.1492540299 - - hypothetical protein POPTR_0001s31230g [Populus trichocarpa]
17 Hb_003211_010 0.1495241598 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
18 Hb_000932_070 0.1496756049 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
19 Hb_000853_030 0.1507164014 - - sucrose synthase 2 [Hevea brasiliensis]
20 Hb_007894_130 0.1511179313 - - hypothetical protein RCOM_0584960 [Ricinus communis]

Gene co-expression network

sample Hb_002739_150 Hb_002739_150 Hb_001055_030 Hb_001055_030 Hb_002739_150--Hb_001055_030 Hb_001638_040 Hb_001638_040 Hb_002739_150--Hb_001638_040 Hb_156850_070 Hb_156850_070 Hb_002739_150--Hb_156850_070 Hb_006663_030 Hb_006663_030 Hb_002739_150--Hb_006663_030 Hb_080451_010 Hb_080451_010 Hb_002739_150--Hb_080451_010 Hb_010831_020 Hb_010831_020 Hb_002739_150--Hb_010831_020 Hb_007894_130 Hb_007894_130 Hb_001055_030--Hb_007894_130 Hb_000236_410 Hb_000236_410 Hb_001055_030--Hb_000236_410 Hb_093084_070 Hb_093084_070 Hb_001055_030--Hb_093084_070 Hb_008143_070 Hb_008143_070 Hb_001055_030--Hb_008143_070 Hb_000009_330 Hb_000009_330 Hb_001055_030--Hb_000009_330 Hb_000622_250 Hb_000622_250 Hb_001055_030--Hb_000622_250 Hb_001638_040--Hb_010831_020 Hb_000540_120 Hb_000540_120 Hb_001638_040--Hb_000540_120 Hb_000449_050 Hb_000449_050 Hb_001638_040--Hb_000449_050 Hb_164010_070 Hb_164010_070 Hb_001638_040--Hb_164010_070 Hb_000853_030 Hb_000853_030 Hb_001638_040--Hb_000853_030 Hb_156850_070--Hb_000622_250 Hb_000740_110 Hb_000740_110 Hb_156850_070--Hb_000740_110 Hb_000976_040 Hb_000976_040 Hb_156850_070--Hb_000976_040 Hb_005143_030 Hb_005143_030 Hb_156850_070--Hb_005143_030 Hb_005214_090 Hb_005214_090 Hb_156850_070--Hb_005214_090 Hb_000627_180 Hb_000627_180 Hb_156850_070--Hb_000627_180 Hb_006663_030--Hb_156850_070 Hb_002693_060 Hb_002693_060 Hb_006663_030--Hb_002693_060 Hb_000457_140 Hb_000457_140 Hb_006663_030--Hb_000457_140 Hb_032808_030 Hb_032808_030 Hb_006663_030--Hb_032808_030 Hb_001894_120 Hb_001894_120 Hb_006663_030--Hb_001894_120 Hb_004162_120 Hb_004162_120 Hb_080451_010--Hb_004162_120 Hb_012239_030 Hb_012239_030 Hb_080451_010--Hb_012239_030 Hb_000107_560 Hb_000107_560 Hb_080451_010--Hb_000107_560 Hb_065500_030 Hb_065500_030 Hb_080451_010--Hb_065500_030 Hb_000979_240 Hb_000979_240 Hb_080451_010--Hb_000979_240 Hb_001205_110 Hb_001205_110 Hb_080451_010--Hb_001205_110 Hb_010831_020--Hb_000540_120 Hb_001691_150 Hb_001691_150 Hb_010831_020--Hb_001691_150 Hb_002316_050 Hb_002316_050 Hb_010831_020--Hb_002316_050 Hb_155702_010 Hb_155702_010 Hb_010831_020--Hb_155702_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.132 141.061 6.64383 63.361 61.5253 63.0307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.7708 18.3384 24.6868 46.5636 18.7911

CAGE analysis