Hb_000107_560

Information

Type -
Description -
Location Contig107: 423429-429046
Sequence    

Annotation

kegg
ID rcu:RCOM_1386120
description glutamate receptor 3 plant, putative
nr
ID XP_002520606.1
description glutamate receptor 3 plant, putative [Ricinus communis]
swissprot
ID Q93YT1
description Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2
trembl
ID B9S3N7
description Glutamate receptor OS=Ricinus communis GN=RCOM_1386120 PE=3 SV=1
Gene Ontology
ID GO:0016020
description glutamate receptor -like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_560 0.0 - - glutamate receptor 3 plant, putative [Ricinus communis]
2 Hb_080451_010 0.1244573011 - - PREDICTED: ankyrin repeat-containing protein At2g01680 [Jatropha curcas]
3 Hb_089100_040 0.1288434523 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
4 Hb_004162_120 0.1288678569 - - PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Populus euphratica]
5 Hb_065500_030 0.1346207972 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
6 Hb_009897_010 0.1357496721 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
7 Hb_000120_970 0.1374633727 - - PREDICTED: probable acyl-activating enzyme 2 isoform X2 [Jatropha curcas]
8 Hb_000679_210 0.1404436527 - - grr1, plant, putative [Ricinus communis]
9 Hb_000751_140 0.1431536253 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
10 Hb_000571_160 0.1477548843 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
11 Hb_012239_030 0.1503784902 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_002005_120 0.1508025143 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
13 Hb_000732_080 0.1516514914 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g45440 [Jatropha curcas]
14 Hb_000216_020 0.1536077218 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
15 Hb_011716_110 0.1548838728 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
16 Hb_003604_040 0.1556998104 - - Serine/threonine-protein kinase sepA [Morus notabilis]
17 Hb_011828_030 0.1559295746 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
18 Hb_006907_140 0.1565432381 - - conserved hypothetical protein [Ricinus communis]
19 Hb_036568_010 0.1566154728 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 23 [Jatropha curcas]
20 Hb_000866_370 0.1587755795 - - synaptotagmin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000107_560 Hb_000107_560 Hb_080451_010 Hb_080451_010 Hb_000107_560--Hb_080451_010 Hb_089100_040 Hb_089100_040 Hb_000107_560--Hb_089100_040 Hb_004162_120 Hb_004162_120 Hb_000107_560--Hb_004162_120 Hb_065500_030 Hb_065500_030 Hb_000107_560--Hb_065500_030 Hb_009897_010 Hb_009897_010 Hb_000107_560--Hb_009897_010 Hb_000120_970 Hb_000120_970 Hb_000107_560--Hb_000120_970 Hb_080451_010--Hb_004162_120 Hb_012239_030 Hb_012239_030 Hb_080451_010--Hb_012239_030 Hb_080451_010--Hb_065500_030 Hb_000979_240 Hb_000979_240 Hb_080451_010--Hb_000979_240 Hb_001205_110 Hb_001205_110 Hb_080451_010--Hb_001205_110 Hb_000189_470 Hb_000189_470 Hb_089100_040--Hb_000189_470 Hb_000866_370 Hb_000866_370 Hb_089100_040--Hb_000866_370 Hb_000362_090 Hb_000362_090 Hb_089100_040--Hb_000362_090 Hb_089100_040--Hb_009897_010 Hb_000216_020 Hb_000216_020 Hb_089100_040--Hb_000216_020 Hb_089100_040--Hb_065500_030 Hb_004162_120--Hb_065500_030 Hb_000751_140 Hb_000751_140 Hb_004162_120--Hb_000751_140 Hb_000917_100 Hb_000917_100 Hb_004162_120--Hb_000917_100 Hb_000197_030 Hb_000197_030 Hb_004162_120--Hb_000197_030 Hb_002005_120 Hb_002005_120 Hb_004162_120--Hb_002005_120 Hb_065500_030--Hb_002005_120 Hb_011828_030 Hb_011828_030 Hb_065500_030--Hb_011828_030 Hb_000836_020 Hb_000836_020 Hb_065500_030--Hb_000836_020 Hb_000117_070 Hb_000117_070 Hb_065500_030--Hb_000117_070 Hb_000599_130 Hb_000599_130 Hb_065500_030--Hb_000599_130 Hb_003155_020 Hb_003155_020 Hb_009897_010--Hb_003155_020 Hb_009897_010--Hb_065500_030 Hb_009897_010--Hb_004162_120 Hb_011716_110 Hb_011716_110 Hb_009897_010--Hb_011716_110 Hb_009897_010--Hb_000751_140 Hb_000120_970--Hb_080451_010 Hb_000521_170 Hb_000521_170 Hb_000120_970--Hb_000521_170 Hb_000120_970--Hb_011828_030 Hb_020178_060 Hb_020178_060 Hb_000120_970--Hb_020178_060 Hb_000120_970--Hb_089100_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.16755 19.0451 1.8183 11.1027 7.37491 5.75682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.41364 0.621374 1.94006 8.79088 6.5785

CAGE analysis