Hb_020178_060

Information

Type -
Description -
Location Contig20178: 48474-53977
Sequence    

Annotation

kegg
ID rcu:RCOM_1591980
description purine permease, putative
nr
ID XP_012071717.1
description PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
swissprot
ID Q8GZD4
description Nucleobase-ascorbate transporter 3 OS=Arabidopsis thaliana GN=NAT3 PE=2 SV=2
trembl
ID A0A067L2R9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04329 PE=4 SV=1
Gene Ontology
ID GO:0005886
description nucleobase-ascorbate transporter 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20526: 52437-52631 , PASA_asmbl_20527: 48527-53925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020178_060 0.0 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
2 Hb_002903_130 0.1212297571 - - epoxide hydrolase, putative [Ricinus communis]
3 Hb_000283_150 0.1414223145 - - Ankyrin repeat family protein [Theobroma cacao]
4 Hb_008948_160 0.1424569005 - - PREDICTED: uncharacterized protein LOC104214688 isoform X2 [Nicotiana sylvestris]
5 Hb_012565_080 0.1484564562 - - serine/threonine kinase, putative [Ricinus communis]
6 Hb_000538_190 0.1520912492 - - PREDICTED: protein DJ-1 homolog D [Jatropha curcas]
7 Hb_000521_170 0.1539259366 - - PREDICTED: callose synthase 1 [Jatropha curcas]
8 Hb_000640_130 0.1548296499 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
9 Hb_000120_970 0.1560541257 - - PREDICTED: probable acyl-activating enzyme 2 isoform X2 [Jatropha curcas]
10 Hb_001946_150 0.161602609 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004126_080 0.1624723122 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
12 Hb_003640_030 0.1645472966 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
13 Hb_000022_180 0.1688749087 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
14 Hb_000789_240 0.1694999211 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
15 Hb_001416_020 0.1736477301 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
16 Hb_048848_010 0.1744217681 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
17 Hb_143986_010 0.174855713 - - PREDICTED: beta-galactosidase [Jatropha curcas]
18 Hb_002016_040 0.1749493072 rubber biosynthesis Gene Name: SRPP8 PREDICTED: stress-related protein [Jatropha curcas]
19 Hb_010398_010 0.1755347747 - - PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 15a-like [Malus domestica]
20 Hb_002609_090 0.1758081149 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_020178_060 Hb_020178_060 Hb_002903_130 Hb_002903_130 Hb_020178_060--Hb_002903_130 Hb_000283_150 Hb_000283_150 Hb_020178_060--Hb_000283_150 Hb_008948_160 Hb_008948_160 Hb_020178_060--Hb_008948_160 Hb_012565_080 Hb_012565_080 Hb_020178_060--Hb_012565_080 Hb_000538_190 Hb_000538_190 Hb_020178_060--Hb_000538_190 Hb_000521_170 Hb_000521_170 Hb_020178_060--Hb_000521_170 Hb_000977_010 Hb_000977_010 Hb_002903_130--Hb_000977_010 Hb_001946_150 Hb_001946_150 Hb_002903_130--Hb_001946_150 Hb_003640_030 Hb_003640_030 Hb_002903_130--Hb_003640_030 Hb_000097_040 Hb_000097_040 Hb_002903_130--Hb_000097_040 Hb_000362_110 Hb_000362_110 Hb_002903_130--Hb_000362_110 Hb_001416_020 Hb_001416_020 Hb_000283_150--Hb_001416_020 Hb_000640_130 Hb_000640_130 Hb_000283_150--Hb_000640_130 Hb_002827_020 Hb_002827_020 Hb_000283_150--Hb_002827_020 Hb_000283_150--Hb_000521_170 Hb_000036_050 Hb_000036_050 Hb_000283_150--Hb_000036_050 Hb_120470_010 Hb_120470_010 Hb_008948_160--Hb_120470_010 Hb_000105_030 Hb_000105_030 Hb_008948_160--Hb_000105_030 Hb_143986_010 Hb_143986_010 Hb_008948_160--Hb_143986_010 Hb_000105_020 Hb_000105_020 Hb_008948_160--Hb_000105_020 Hb_011791_020 Hb_011791_020 Hb_008948_160--Hb_011791_020 Hb_003604_040 Hb_003604_040 Hb_008948_160--Hb_003604_040 Hb_000789_240 Hb_000789_240 Hb_012565_080--Hb_000789_240 Hb_012565_080--Hb_001416_020 Hb_012565_080--Hb_002827_020 Hb_012565_080--Hb_000283_150 Hb_002016_040 Hb_002016_040 Hb_012565_080--Hb_002016_040 Hb_001369_770 Hb_001369_770 Hb_000538_190--Hb_001369_770 Hb_020178_050 Hb_020178_050 Hb_000538_190--Hb_020178_050 Hb_003525_020 Hb_003525_020 Hb_000538_190--Hb_003525_020 Hb_002942_110 Hb_002942_110 Hb_000538_190--Hb_002942_110 Hb_004976_060 Hb_004976_060 Hb_000538_190--Hb_004976_060 Hb_089100_040 Hb_089100_040 Hb_000538_190--Hb_089100_040 Hb_000032_310 Hb_000032_310 Hb_000521_170--Hb_000032_310 Hb_000521_170--Hb_000640_130 Hb_000521_170--Hb_001416_020 Hb_000932_070 Hb_000932_070 Hb_000521_170--Hb_000932_070 Hb_011828_030 Hb_011828_030 Hb_000521_170--Hb_011828_030 Hb_011671_230 Hb_011671_230 Hb_000521_170--Hb_011671_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7759 57.2203 8.4188 9.33692 29.6443 14.338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.58457 3.57237 2.57964 47.4924 8.62578

CAGE analysis