Hb_000097_040

Information

Type transcription factor
Description TF Family: MYB
Location Contig97: 55746-57108
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05200g
description POPTRDRAFT_661734; hypothetical protein
nr
ID AFM77857.1
description myb domain protein [Hevea brasiliensis]
swissprot
ID Q9LDE1
description Transcription factor MYB108 OS=Arabidopsis thaliana GN=MYB108 PE=1 SV=1
trembl
ID K7PMP7
description Myb domain protein OS=Hevea brasiliensis GN=MYB2 PE=2 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb108-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000097_040 0.0 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
2 Hb_002903_130 0.1384496075 - - epoxide hydrolase, putative [Ricinus communis]
3 Hb_000977_010 0.1817520736 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
4 Hb_011618_040 0.1879997526 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000556_110 0.2046435442 - - hypothetical protein POPTR_0014s06790g [Populus trichocarpa]
6 Hb_003640_030 0.2140309231 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
7 Hb_001946_150 0.2166799143 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001951_030 0.217177902 - - hypothetical protein JCGZ_04584 [Jatropha curcas]
9 Hb_000061_380 0.2172102921 - - conserved hypothetical protein [Ricinus communis]
10 Hb_048848_010 0.2184359598 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
11 Hb_007481_020 0.222613074 - - -
12 Hb_000803_100 0.2243847653 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
13 Hb_001584_010 0.2250163512 - - kelch repeat protein, putative [Ricinus communis]
14 Hb_000976_440 0.225888619 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_007416_150 0.2269131127 - - sarcosine oxidase, putative [Ricinus communis]
16 Hb_020178_060 0.2272013277 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
17 Hb_000313_370 0.2272645171 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_003384_070 0.2313541049 - - PREDICTED: methylesterase 17-like [Populus euphratica]
19 Hb_005186_090 0.2314356861 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_001248_030 0.2350769852 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000097_040 Hb_000097_040 Hb_002903_130 Hb_002903_130 Hb_000097_040--Hb_002903_130 Hb_000977_010 Hb_000977_010 Hb_000097_040--Hb_000977_010 Hb_011618_040 Hb_011618_040 Hb_000097_040--Hb_011618_040 Hb_000556_110 Hb_000556_110 Hb_000097_040--Hb_000556_110 Hb_003640_030 Hb_003640_030 Hb_000097_040--Hb_003640_030 Hb_001946_150 Hb_001946_150 Hb_000097_040--Hb_001946_150 Hb_002903_130--Hb_000977_010 Hb_020178_060 Hb_020178_060 Hb_002903_130--Hb_020178_060 Hb_002903_130--Hb_001946_150 Hb_002903_130--Hb_003640_030 Hb_000362_110 Hb_000362_110 Hb_002903_130--Hb_000362_110 Hb_000313_370 Hb_000313_370 Hb_000977_010--Hb_000313_370 Hb_000977_010--Hb_000362_110 Hb_001351_040 Hb_001351_040 Hb_000977_010--Hb_001351_040 Hb_000189_120 Hb_000189_120 Hb_000977_010--Hb_000189_120 Hb_001584_010 Hb_001584_010 Hb_000977_010--Hb_001584_010 Hb_011618_040--Hb_000556_110 Hb_000670_110 Hb_000670_110 Hb_011618_040--Hb_000670_110 Hb_000106_070 Hb_000106_070 Hb_011618_040--Hb_000106_070 Hb_001454_340 Hb_001454_340 Hb_011618_040--Hb_001454_340 Hb_003119_070 Hb_003119_070 Hb_011618_040--Hb_003119_070 Hb_007416_150 Hb_007416_150 Hb_011618_040--Hb_007416_150 Hb_004195_110 Hb_004195_110 Hb_000556_110--Hb_004195_110 Hb_009823_010 Hb_009823_010 Hb_000556_110--Hb_009823_010 Hb_002311_370 Hb_002311_370 Hb_000556_110--Hb_002311_370 Hb_000098_310 Hb_000098_310 Hb_000556_110--Hb_000098_310 Hb_000025_020 Hb_000025_020 Hb_000556_110--Hb_000025_020 Hb_003640_030--Hb_000362_110 Hb_003640_030--Hb_020178_060 Hb_000283_150 Hb_000283_150 Hb_003640_030--Hb_000283_150 Hb_003640_030--Hb_000977_010 Hb_000061_380 Hb_000061_380 Hb_003640_030--Hb_000061_380 Hb_001946_150--Hb_000362_110 Hb_001946_150--Hb_000313_370 Hb_000866_090 Hb_000866_090 Hb_001946_150--Hb_000866_090 Hb_000645_240 Hb_000645_240 Hb_001946_150--Hb_000645_240 Hb_001799_190 Hb_001799_190 Hb_001946_150--Hb_001799_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.22715 22.8429 3.78501 2.71945 7.95585 3.29368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.380697 0.166364 0.0617835 33.4105 1.09957

CAGE analysis